Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lal10g0453 | ATGGAAATTCAATTCCAGGTTCCAAATCTGCAGCATCAGAAAGCTACCATTTCAGTCACCAACAACAACAAAGGAGGCAAATTCAAAGGCAGAAACAAAAACAAAAACAAAAACACAAACAAATTTGTTGGTGTTAGACAAAGACCTTCAGGTAGATGGGTATCTGAGATCAAAGACACAACTAAGAAAATAAGAATGTGGCTTGGCACATTTGAAACTGCAGAGGAAGCAGCAAGAGCTTATGATGAAGCCGCGTGTCTTCTTCGCGGATCAAATACTCGAACCAACTTCATAACTCATGTCTCAATGGATTCCCCTCTCGCTTCGCGCATTCGGAATCTTCTTAAAGACCGAAAAGGTGTCAAACAAAAACCGGATGATATGGTTGTTGTTGATACATCATTTGCCACAAGAGTTAGCAATGCTAGCACTAGTACTAATTCTAGCAATAGTAATTATAATGAGAAGAATGATAACTCTCTTTCTAGTGTGACAACAACTCAAAACAGAACACAGTTTTTTGATGATGCTTATGAACATGGTTTGAACAATTGCAAGATGGAATTAGAGTTAAGTACACAATCCAATCCAAAATTTTCATGGGGTTTTGACCATTTTCCTTTTGTTCAAATGTTGGATATGCCAAATATTGATGCACCAGATTTTGAGCTATCAGAATTTGAGAGGATGAGAGTTGAAAGACAAATATCAGCTTCACTCTATGCAATTAATGGAGTGCATGAGTACATGGAAGCTGTTAAGGACTCTAATGAATCTCTGTGGGATCTTCCACCTTTATGCTCATTGTTCTGTTAA | 816 | 0.3762 | MEIQFQVPNLQHQKATISVTNNNKGGKFKGRNKNKNKNTNKFVGVRQRPSGRWVSEIKDTTKKIRMWLGTFETAEEAARAYDEAACLLRGSNTRTNFITHVSMDSPLASRIRNLLKDRKGVKQKPDDMVVVDTSFATRVSNASTSTNSSNSNYNEKNDNSLSSVTTTQNRTQFFDDAYEHGLNNCKMELELSTQSNPKFSWGFDHFPFVQMLDMPNIDAPDFELSEFERMRVERQISASLYAINGVHEYMEAVKDSNESLWDLPPLCSLFC | 271 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lal10g0453 | 271 | Gene3D | AP2/ERF domain | 40 | 99 | IPR036955 | GO:0003700|GO:0006355 | |
Lal10g0453 | 271 | MobiDBLite | consensus disorder prediction | 140 | 162 | - | - | |
Lal10g0453 | 271 | Pfam | AP2 domain | 41 | 90 | IPR001471 | GO:0003700|GO:0006355 | |
Lal10g0453 | 271 | SUPERFAMILY | DNA-binding domain | 41 | 98 | IPR016177 | GO:0003677 | |
Lal10g0453 | 271 | ProSiteProfiles | AP2/ERF domain profile. | 41 | 98 | IPR001471 | GO:0003700|GO:0006355 | |
Lal10g0453 | 271 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 15 | 258 | - | - | |
Lal10g0453 | 271 | CDD | AP2 | 42 | 97 | IPR001471 | GO:0003700|GO:0006355 | |
Lal10g0453 | 271 | PRINTS | Ethylene responsive element binding protein signature | 42 | 53 | IPR001471 | GO:0003700|GO:0006355 | |
Lal10g0453 | 271 | PRINTS | Ethylene responsive element binding protein signature | 64 | 80 | IPR001471 | GO:0003700|GO:0006355 | |
Lal10g0453 | 271 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERN2 | 15 | 258 | - | - | |
Lal10g0453 | 271 | SMART | rav1_2 | 41 | 104 | IPR001471 | GO:0003700|GO:0006355 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lal10g0453 | Lal-Chr10 | 10734434 | 10735249 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lal10g0453 | 29 | 271 | AP2-EREBP Transcription Factor Family | AT5G19790 | 42.966 | 2.08e-47 | 157 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | AP2/ERF-ERF | Lal10g0453 | AP2 | 3.1e-13 | CL0081 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lal10g0453 | K09286 | - | gmx:100796898 | 323.168 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lal8g1024 | 8 | 8061889 | 8062701 | Lal10g0453 | 10 | 10734434 | 10735249 | LSH | |
Lal10g0453 | 10 | 10734434 | 10735249 | Lal13g1599 | 13 | 15818365 | 15819705 | PCT | |
Lal13g1599 | 13 | 15818365 | 15819705 | Lal10g0453 | 10 | 10734434 | 10735249 | PCT |