Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0453 ATGGAAATTCAATTCCAGGTTCCAAATCTGCAGCATCAGAAAGCTACCATTTCAGTCACCAACAACAACAAAGGAGGCAAATTCAAAGGCAGAAACAAAAACAAAAACAAAAACACAAACAAATTTGTTGGTGTTAGACAAAGACCTTCAGGTAGATGGGTATCTGAGATCAAAGACACAACTAAGAAAATAAGAATGTGGCTTGGCACATTTGAAACTGCAGAGGAAGCAGCAAGAGCTTATGATGAAGCCGCGTGTCTTCTTCGCGGATCAAATACTCGAACCAACTTCATAACTCATGTCTCAATGGATTCCCCTCTCGCTTCGCGCATTCGGAATCTTCTTAAAGACCGAAAAGGTGTCAAACAAAAACCGGATGATATGGTTGTTGTTGATACATCATTTGCCACAAGAGTTAGCAATGCTAGCACTAGTACTAATTCTAGCAATAGTAATTATAATGAGAAGAATGATAACTCTCTTTCTAGTGTGACAACAACTCAAAACAGAACACAGTTTTTTGATGATGCTTATGAACATGGTTTGAACAATTGCAAGATGGAATTAGAGTTAAGTACACAATCCAATCCAAAATTTTCATGGGGTTTTGACCATTTTCCTTTTGTTCAAATGTTGGATATGCCAAATATTGATGCACCAGATTTTGAGCTATCAGAATTTGAGAGGATGAGAGTTGAAAGACAAATATCAGCTTCACTCTATGCAATTAATGGAGTGCATGAGTACATGGAAGCTGTTAAGGACTCTAATGAATCTCTGTGGGATCTTCCACCTTTATGCTCATTGTTCTGTTAA 816 0.3762 MEIQFQVPNLQHQKATISVTNNNKGGKFKGRNKNKNKNTNKFVGVRQRPSGRWVSEIKDTTKKIRMWLGTFETAEEAARAYDEAACLLRGSNTRTNFITHVSMDSPLASRIRNLLKDRKGVKQKPDDMVVVDTSFATRVSNASTSTNSSNSNYNEKNDNSLSSVTTTQNRTQFFDDAYEHGLNNCKMELELSTQSNPKFSWGFDHFPFVQMLDMPNIDAPDFELSEFERMRVERQISASLYAINGVHEYMEAVKDSNESLWDLPPLCSLFC 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0453 271 Gene3D AP2/ERF domain 40 99 IPR036955 GO:0003700|GO:0006355
Lal10g0453 271 MobiDBLite consensus disorder prediction 140 162 - -
Lal10g0453 271 Pfam AP2 domain 41 90 IPR001471 GO:0003700|GO:0006355
Lal10g0453 271 SUPERFAMILY DNA-binding domain 41 98 IPR016177 GO:0003677
Lal10g0453 271 ProSiteProfiles AP2/ERF domain profile. 41 98 IPR001471 GO:0003700|GO:0006355
Lal10g0453 271 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 15 258 - -
Lal10g0453 271 CDD AP2 42 97 IPR001471 GO:0003700|GO:0006355
Lal10g0453 271 PRINTS Ethylene responsive element binding protein signature 42 53 IPR001471 GO:0003700|GO:0006355
Lal10g0453 271 PRINTS Ethylene responsive element binding protein signature 64 80 IPR001471 GO:0003700|GO:0006355
Lal10g0453 271 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERN2 15 258 - -
Lal10g0453 271 SMART rav1_2 41 104 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0453 Lal-Chr10 10734434 10735249 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g0453 29 271 AP2-EREBP Transcription Factor Family AT5G19790 42.966 2.08e-47 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal10g0453 AP2 3.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g0453 K09286 - gmx:100796898 323.168
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g1024 8 8061889 8062701 Lal10g0453 10 10734434 10735249 LSH
Lal10g0453 10 10734434 10735249 Lal13g1599 13 15818365 15819705 PCT
Lal13g1599 13 15818365 15819705 Lal10g0453 10 10734434 10735249 PCT