Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0401 ATGCTTGAAACTTTTAACTTGGCGAAAATGAATGTGTACCAAAATGTATCAGTTTCCAATGAGTTCAAGCAAGAGCAAGTCCTTCCCCCTTCTTGCTCAAACAACCTTGATGACCTCTTCTCTTCCCAGAACACAGAAGTGGATGTTGGGTTGGAGTGGCTTTCAGTATTTGTTGAAGACTGTTTTTCCAGCCCCTCAAGCTGTTTCTTGGGACCTGCTAGTGTTCAATCAACAACAGACACAAGCTCCAAACCAAGCACATTGAAGAGACCCCATCATCAGAATGAGTCTTCCCTTCAAAATTTTACAGTGCCTGGTAAGGCCAGAAGCAAAAGGAAAAGGCTTTCAGCACCTAGAACCATAGACCCTATAGACCCTTTAAGAACCATAGACCCTTTAAAAATCATAGAGCCTTTAAGAACCGAAGACCCTTTAAGAACCAGTAGCATGTGGTCACAGAAAACAAGTACACAAAATGAAGCCTTTTGTTCAGACCCTCCTCTCCTGAAACAGGCTTATTGGTTGGCTGATAGTGAACTTTTTGTACCTAAAGAGCAGAAGGATGATGAAGAAAAGATAGTAATGGCCAAAGAAGAAGAAGAAGAAGAAGAAGAAGCAATGATGTTGAAGGGGATTGTGATGAGTAAAGAAAGCTTTGTAAACTGTGAGAGCAATAATGGTCAGCAGCATCCAATGCCAAGGAGGTGCACTCATTGTCTTTCTCAAAGGACCCCACAGTGGAGGGCAGGACCATTGGGTCCAAAGACACTATGCAATGCATGTGGTGTGAGGTATAAGTCTGGTAGGTTGCTTCCAGAGTATAGGCCTGCAAAAAGTCCTACTTTTGTAAGCTACTTGCACTCCAATTCCCACAAGAAAGTCATGGAGATGAGAATGGCTGTTTTACCTTCCATTCCCAGTGAGCACAAGTAG 933 0.4298 MLETFNLAKMNVYQNVSVSNEFKQEQVLPPSCSNNLDDLFSSQNTEVDVGLEWLSVFVEDCFSSPSSCFLGPASVQSTTDTSSKPSTLKRPHHQNESSLQNFTVPGKARSKRKRLSAPRTIDPIDPLRTIDPLKIIEPLRTEDPLRTSSMWSQKTSTQNEAFCSDPPLLKQAYWLADSELFVPKEQKDDEEKIVMAKEEEEEEEEAMMLKGIVMSKESFVNCESNNGQQHPMPRRCTHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVMEMRMAVLPSIPSEHK 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0401 310 ProSitePatterns GATA-type zinc finger domain. 236 261 IPR000679 GO:0006355|GO:0043565
Lal10g0401 310 ProSiteProfiles GATA-type zinc finger domain profile. 230 266 IPR000679 GO:0006355|GO:0043565
Lal10g0401 310 MobiDBLite consensus disorder prediction 73 123 - -
Lal10g0401 310 PANTHER GATA TRANSCRIPTION FACTOR 137 309 - -
Lal10g0401 310 PANTHER GATA TRANSCRIPTION FACTOR 10 127 - -
Lal10g0401 310 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 231 294 - -
Lal10g0401 310 Coils Coil 186 206 - -
Lal10g0401 310 SMART GATA_3 230 284 IPR000679 GO:0006355|GO:0043565
Lal10g0401 310 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 10 127 - -
Lal10g0401 310 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 137 309 - -
Lal10g0401 310 CDD ZnF_GATA 235 282 IPR000679 GO:0006355|GO:0043565
Lal10g0401 310 Pfam GATA zinc finger 236 270 IPR000679 GO:0006355|GO:0043565
Lal10g0401 310 Gene3D - 226 297 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0401 Lal-Chr10 9862640 9864446 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g0401 51 298 C2C2-Gata Transcription Factor Family AT4G32890 36.576 1.14e-36 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lal10g0401 GATA 2.2e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g0401 - - gmx:100812088 355.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g1038 8 8259252 8260806 Lal10g0401 10 9862640 9864446 LSH