Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0395 ATGGAAGAGCCTATTGTGGTTAACAAAAGAGAGGAGCCTCTTGATTTGCCTCCAGGGTTCAGATTCCACCCCACAGATGAAGAGATCATCACTTTTTATTTGACTGAAAAAGTGATGAACAGCAATTTCAGTGCAACTGCTATTGGTGAAGCTGATCTGAACAAGTGTGAGCCTTGGGATTTACCAAAGAAGGCAAAGATGGGGGAGAAAGAGTGGTATTTCTTCTGCCAAAAAGATAGAAAGTATCCAACAGGTATGAGAACGAATCGTGCAACTGAATTCGGGTACTGGAAGGCCACTGGAAAAGACAAAGAGATTTATAAAGGGAAAGGGAATCTTGTTGGGATGAAGAAAACCCTCGTGTTCTATAGAGGAAGAGCCCCTAAGGGAGAAAAGACCAATTGGGTCATGCATGAATTTAGATTGGAAGGAAAATTTGCATGTTTCAACCTCCCTAAGGTTGCAAAGGATGAATGGGTTGTGAGTAAGGTTTTTCACAAGAACACAGATGTTAAAAAGACCCCATCAATTATTGGGAATGATATTCTTGATTGTTCTTCACTCCCACCCCTCATTGATCCTCCTTATAGAAGCAATACCAAGAAGCCTTTAGGTTATGATGACAATGACCCAAAGGGTATCACCAACCCACAGTTTTCATCAGCTAAATCATCATTAGAAGAAGGCTATTATCTTCCCAGCTTCTCCATCAACAATCACCACCAAATCTTGATCAAGCCAGAAGAACAAAGATCCTACGATATCAATCCAATCAACAACAACAACAACAATTACCCTTCTAATCAAACCAATTTCAACAACACATTCTTGCAGCCTCAAATTAGAATCCAAAATAATCCAAGCTCCTCCTTTCAGCAAAACATGTTTTCAGATTACTATATGCACCAAAACAAGATGAACACTTCCATGCCAATTATTGGTTTTGAGGGCAATAGTAACAGTGATGAGGATTTCCTAAGAGCATTTGCAGCCAAGAATGATTATTTATCTGGATTGGACAAACAGTGCAAGATGAATCTATCTGTAGTGAGTGTATCCCAAGACACTGGCCTTAGCAATGACAGAAACACTGACACATCTTCTGCAGTGTCCAAACAAGACATTGGAGGAATAAACAGGTCATTGTACGAGGATTTTGAAGGTCCATTATCATCTGTTGCACCTCTCTCAGATTTGGATTCAATATGGGATGAATACTAA 1221 0.398 MEEPIVVNKREEPLDLPPGFRFHPTDEEIITFYLTEKVMNSNFSATAIGEADLNKCEPWDLPKKAKMGEKEWYFFCQKDRKYPTGMRTNRATEFGYWKATGKDKEIYKGKGNLVGMKKTLVFYRGRAPKGEKTNWVMHEFRLEGKFACFNLPKVAKDEWVVSKVFHKNTDVKKTPSIIGNDILDCSSLPPLIDPPYRSNTKKPLGYDDNDPKGITNPQFSSAKSSLEEGYYLPSFSINNHHQILIKPEEQRSYDINPINNNNNNYPSNQTNFNNTFLQPQIRIQNNPSSSFQQNMFSDYYMHQNKMNTSMPIIGFEGNSNSDEDFLRAFAAKNDYLSGLDKQCKMNLSVVSVSQDTGLSNDRNTDTSSAVSKQDIGGINRSLYEDFEGPLSSVAPLSDLDSIWDEY 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0395 406 PANTHER NAC DOMAIN-CONTAINING PROTEIN 87 8 354 - -
Lal10g0395 406 ProSiteProfiles NAC domain profile. 16 167 IPR003441 GO:0003677|GO:0006355
Lal10g0395 406 SUPERFAMILY NAC domain 14 168 IPR036093 GO:0003677|GO:0006355
Lal10g0395 406 Pfam No apical meristem (NAM) protein 17 142 IPR003441 GO:0003677|GO:0006355
Lal10g0395 406 Gene3D NAC domain 25 172 IPR036093 GO:0003677|GO:0006355
Lal10g0395 406 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0395 Lal-Chr10 9726238 9728488 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g0395 1 203 NAC Transcription Factor Family AT5G18270 70.776 1.75e-107 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lal10g0395 NAM 4.9e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g0395 - - aprc:113861501 585.104