Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0376 ATGGCTAATGCTATAAAGGCAGCAATTGGAGATGCAGTGTTGACCTTCATGTGGGTCTTCTGTGCTTCCACTTTAGGGATAGTTACTGGTGCTATAACTAAAGCACTTGATATTCAGAATATCTCTTATAATGGTTTCCCTTACCCTTCAGTTTTTGTCACCACTTTCCTTATCTTTGTCCTTGTCTTTACCTTTACCATCATTGGTGATTTATTGGGTGGTGCCAGTTTCAACCCCACAGGCACAGCTTCCTTTTATGCTGTTGGTCTTGGTTCTGATACTCTTATCTCAATGGCTCTTCGTTTCCCTGCACAGGCTCTTGGTGCTGCTGCTGGTGCTATTGCAATTACGGAGGTGATTCCTAAGGAATACAAGCACATGATGGGTGGACCTTCTTTGAAAGTTGACTTACATACAGGGGCTGTTGCTGAAGCAGTGTTGACATTTGTGATTACTTTTATTGTTCTCTTAATCATCCTCAAGGGCCCTCGTAGTCAACTATTGAAGATTTGGTTGCTATCTATGTCAACCATAACTTTGGTCATGGCTGGATCTACTTACACTGGACCATCCATGAACCCTGCCAATGCCTTTGGTTGGGCATACTTAAACAACCTACACAACACATGGGACCATTTCTATGTTTATTGGATTTGCCCCTTCATTGGTGCAATATTGGCTGCTTGGTTATTCCGTGTTGTATTTCCCGCACCAGAATCCAAAAAGAAACAGAAGAAAGCATGA 744 0.4247 MANAIKAAIGDAVLTFMWVFCASTLGIVTGAITKALDIQNISYNGFPYPSVFVTTFLIFVLVFTFTIIGDLLGGASFNPTGTASFYAVGLGSDTLISMALRFPAQALGAAAGAIAITEVIPKEYKHMMGGPSLKVDLHTGAVAEAVLTFVITFIVLLIILKGPRSQLLKIWLLSMSTITLVMAGSTYTGPSMNPANAFGWAYLNNLHNTWDHFYVYWICPFIGAILAAWLFRVVFPAPESKKKQKKA 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0376 247 PANTHER AQUAPORIN SIP1-1 3 244 - -
Lal10g0376 247 Pfam Major intrinsic protein 4 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal10g0376 247 Gene3D Glycerol uptake facilitator protein. 1 247 IPR023271 -
Lal10g0376 247 PRINTS Major intrinsic protein family signature 6 25 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal10g0376 247 PRINTS Major intrinsic protein family signature 58 82 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal10g0376 247 PRINTS Major intrinsic protein family signature 97 116 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal10g0376 247 PRINTS Major intrinsic protein family signature 143 161 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal10g0376 247 PRINTS Major intrinsic protein family signature 174 196 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal10g0376 247 PRINTS Major intrinsic protein family signature 214 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal10g0376 247 PANTHER AQUAPORIN SIP1-1 3 244 IPR044222 GO:0015250
Lal10g0376 247 SUPERFAMILY Aquaporin-like 4 239 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0376 Lal-Chr10 9406815 9411155 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g0376 3 247 Major Intrinsic Protein MIP AT5G18290 53.441 9.46e-84 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g0376 K09875 - gmx:100792787 367.466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0945 8 7166887 7170371 Lal10g0376 10 9406815 9411155 LSH