Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0234 ATGTCAAGTTCTCTTGCCGAAATATTAGGAGGAGCTTCAGGAACTGTGGCATTGGTAGGGATACTTATTGTACTTATATGGTATTGTATGTTTCACAATAGGAGTGCTTCAAGGACTTCAGAAACAGGGTCCTCTGATCCTTCCCAAGTGGGAAGACATGGTGTAACCGAGTTAGCAATTCGAGATACTAGGCGTTTTGACATGGAAGAACTTTCTCTGGCCACAAATAATTTCAGTGAGAAAAACTTGATTGGAGAAGGAAAATTTGGGGAGGTTTACAAGGGTTTACTTCAAGATGGGATGCTTGCAGCCATCAAAAAGCGTCGAGGAATTGCTACTCAGGAATTTGTTGATGAAGTACGATATCTATCATCTATTCAGCATCGGAATCTCGTTATTCTCATAGGCTACTGCCAGGAAAACAGTCTACAGTTTCTTGTATATGAATATGTGCCTAATGGAAGCGTCTCCAGTCACTTGTATGGTTCCGGTCAACAATCACACGAGAAGCTAGAATTCAAGCATAGACTTTCAATAGCTCAAGGTGCAGCTAAAGGTTTGGCTCATCTTCACTCTTTGAGTCCACGTCTGGTGCATAAGGATTTCAAAACAGCTAATGTTCTTGTGGATGAAAACTTTATTGCTAAGGTCGCAGATGCTGGACTTCGTAATTTTTTCGGCAGAGTCAATATTGCAGCATCGTCTTCTCAAATGGAAGCGGATGAAATATTCCTTGCTCCTGAGGTGAAAGAGTTCAGAGGATTTTCTGAAAAGAGTGATGTATACAGCTTTGCGGTATTTTTATTGGAATTGTTGAGTGGAAAAGAAGCAACAGAATCAGCATCTCTATACTCTAGCCAAAATCTGGTCGAATGGGTGCAAAGTAATGACGACCGTGGCATTACGTCTAACATCATTGATCAGCGATTGGGGAGTTTTACAGCTGAAGGCATCGAAGACTTCATCCGGCTGATAGTTAGATGTTTAGATCCTTCTACCGAGAGACGACCTGCAATGAGCTATGTGGTAATGGAACTTGATCGGATACATGATAAAGAAATGAGCTTGACAACGATGATTGGTGAAGAAGGAACCCCGACCGTGACGCTCGGAAGTCAGTTATTCAAAGCAACAACATAA 1140 0.4175 MSSSLAEILGGASGTVALVGILIVLIWYCMFHNRSASRTSETGSSDPSQVGRHGVTELAIRDTRRFDMEELSLATNNFSEKNLIGEGKFGEVYKGLLQDGMLAAIKKRRGIATQEFVDEVRYLSSIQHRNLVILIGYCQENSLQFLVYEYVPNGSVSSHLYGSGQQSHEKLEFKHRLSIAQGAAKGLAHLHSLSPRLVHKDFKTANVLVDENFIAKVADAGLRNFFGRVNIAASSSQMEADEIFLAPEVKEFRGFSEKSDVYSFAVFLLELLSGKEATESASLYSSQNLVEWVQSNDDRGITSNIIDQRLGSFTAEGIEDFIRLIVRCLDPSTERRPAMSYVVMELDRIHDKEMSLTTMIGEEGTPTVTLGSQLFKATT 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0234 379 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 1 378 - -
Lal10g0234 379 ProSitePatterns Serine/Threonine protein kinases active-site signature. 197 209 IPR008271 GO:0004672|GO:0006468
Lal10g0234 379 ProSitePatterns Protein kinases ATP-binding region signature. 84 107 IPR017441 GO:0005524
Lal10g0234 379 SUPERFAMILY Protein kinase-like (PK-like) 63 355 IPR011009 -
Lal10g0234 379 ProSiteProfiles Protein kinase domain profile. 78 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal10g0234 379 Pfam Protein tyrosine and serine/threonine kinase 81 346 IPR001245 GO:0004672|GO:0006468
Lal10g0234 379 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 378 - -
Lal10g0234 379 Gene3D Phosphorylase Kinase; domain 1 42 150 - -
Lal10g0234 379 Gene3D Transferase(Phosphotransferase) domain 1 151 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0234 Lal-Chr10 3358989 3363186 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g0234 8 349 Receptor kinase-like Gene Family AT1G79620 37.037 1.34e-61 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXa Lal10g0234 PK_Tyr_Ser-Thr 2.9e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g0234 - - gmx:100305436 598.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g0234 10 3358989 3363186 Lal10g0234 10 3358989 3363186 ECH
Lal8g1105 8 9207814 9211899 Lal10g0234 10 3358989 3363186 LSH