Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0200 ATGGCTTTCTCTGATTTTTCTAACCGCCGCAATTCTATCATTCCCAATTTCCTCTATTCTTCTTCATCCAAAACCCTACCTATCCACAATAACCTCACCGCCGCCGCTGCCGTCGCTTCCGCCGATGCCGGAGTATCCCGGCGTCGCGGACCGTTGATTCCTGCACCGAGCGAGCCAGGGAAGATTGAAATGTACTCACCGGCTTTCTATGCTGCATGTACAGCTGGAGGTATTCTCAGTTGTGGACTCACTCACATGACGGTTACTCCTCTTGATCTTGTCAAGTGTAACATGCAGATTGACCCTGCTAAGTACAAGAGCATCTCGTCTGGTTTTGGTGTTTTGCTCAAGGAGCAAGGAGTGAAGGGCTTTTTCCGTGGATGGGTTCCTACCTTGCTTGGTTACAGTGCACAGGGTGCTTGCAAATTTGGATTCTATGAGTTCTTCAAGAAGTACTATTCTGATATTGCTGGCCCAGAGTATGCAACCAAATACAAGACTTTGATCTATCTTGCTGGTTCAGCATCCGCAGAGGTTATTGCAGATATTGCACTCTGCCCCTTTGAGGCTGTGAAGGTCCGTGTTCAAACCCAGCCTGGTTTCGCAAGAGGTCTGTCTGATGGGCTTCCGAAGTTTGTCAAATCTGAAGGAACTCTAGGGTTGTACAAGGGATTAGTGCCTTTGTGGGGACGGCAAATTCCATACACAATGATGAAGTTTGCTTCTTTTGAGACCATTGTTGAGCTGATCTATAAGCATGCCATCCCCAGACCAAAGAGTGAGTGCAGTAAAGGTCTTCAGCTCGGTGTGAGTTTCGCTGGTGGATATATAGCCGGTGTATTGTGTGCAATTGTGTCTCATCCTGCTGATAACCTTGTCTCTTTTCTGAACAACGCCAAAGGAGCAACAGTCGGTGATGCTGTGAAGAAGATTGGTTTATTGGGTCTCTTTACCCGTGGTCTCCCTCTCCGTATTGTTATGATCGGAACACTTACTGGAGCTCAGTGGGGAATATACGATGCATTCAAAGTCTCCGTGGGATTGCCAACCACCGGTGGTCCTGCTCCTGCTGCCGCCATTACTGATGCAAAAGCATAG 1098 0.4809 MAFSDFSNRRNSIIPNFLYSSSSKTLPIHNNLTAAAAVASADAGVSRRRGPLIPAPSEPGKIEMYSPAFYAACTAGGILSCGLTHMTVTPLDLVKCNMQIDPAKYKSISSGFGVLLKEQGVKGFFRGWVPTLLGYSAQGACKFGFYEFFKKYYSDIAGPEYATKYKTLIYLAGSASAEVIADIALCPFEAVKVRVQTQPGFARGLSDGLPKFVKSEGTLGLYKGLVPLWGRQIPYTMMKFASFETIVELIYKHAIPRPKSECSKGLQLGVSFAGGYIAGVLCAIVSHPADNLVSFLNNAKGATVGDAVKKIGLLGLFTRGLPLRIVMIGTLTGAQWGIYDAFKVSVGLPTTGGPAPAAAITDAKA 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0200 365 ProSiteProfiles Solute carrier (Solcar) repeat profile. 165 249 IPR018108 -
Lal10g0200 365 Pfam Mitochondrial carrier protein 168 253 IPR018108 -
Lal10g0200 365 Pfam Mitochondrial carrier protein 71 154 IPR018108 -
Lal10g0200 365 Gene3D Mitochondrial carrier domain 68 344 IPR023395 -
Lal10g0200 365 PANTHER MITOCHONDRIAL PHOSPHATE TRANSPORTER 2 361 - -
Lal10g0200 365 ProSiteProfiles Solute carrier (Solcar) repeat profile. 266 345 IPR018108 -
Lal10g0200 365 PANTHER SOLUTE CARRIER FAMILY 25 (MITOCHONDRIAL CARRIER PHOSPHATE CARRIER), MEMBER 3, LIKE-RELATED-RELATED 2 361 IPR044677 GO:0005315|GO:1990547
Lal10g0200 365 SUPERFAMILY Mitochondrial carrier 71 341 IPR023395 -
Lal10g0200 365 ProSiteProfiles Solute carrier (Solcar) repeat profile. 68 152 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0200 Lal-Chr10 2646366 2649645 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g0200 10 365 Chloroplast and Mitochondria Gene Families AT5G14040 81.402 0.0 589
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g0200 K15102 - gmx:547633 605.134
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g0200 10 2646366 2649645 Lal10g0200 10 2646366 2649645 ECH
Lal10g0200 10 2646366 2649645 Lal13g1560 13 15398607 15404536 PCT
Lal13g1560 13 15398607 15404536 Lal10g0200 10 2646366 2649645 PCT