Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0196 ATGATGATGAATCAACGACAGGGAGAGAAGAAGCAGCTTCAGAAAACCGAGGCCTGTGATTTAAGGGCAGGTGTTGGGGCTGAGCATAGCCTTGTCAATGTTTCAGGAGAAAATAATATAACAACTAATAATCGTGGATCGGATCCGATCCACGATTATTACGATCAGAATCATTACTACCACCACCAACTCGGTCTTGTTCACTTTGGAAATGTGAACAAGAAAAAAAGAATGGCTAGGCAGAGAAGATCCTCTACCAACACCACATTTATGTACCAACTTAACCCGTTCTCTTCAAAGCAAACACCAGTGACTCCACCACCACCACCACCGTTCCTTCTTCCTCCTACCACCTCGCACGTGCAAATTCCTCCATCTCCGGCTTGTGAAACCGATCATGGAAAGTTGAAATTCCTTTTCCAAAAGGAGCTAAAGAACAGTGATGTTAGTTCCCTTAGGAGAATGGTATTGCCAAAGAAAGCAGCAGAGACTTTCCTTCCTGCCCTTGAATCTAAGGAAGGAATTCTTATCAGAATGGATGATTTAGATGGTATTCATGTATGGAATTTCAAGTACAGGTACTGGCCTAATAACAATAGTAGAATGTATGTACTTGAAAACACTGGAGACTTTGTTAACACACATGGCTTGCGCCTTGGAGATTCAATTATGGTTTACCAAGATACTCAAAACAATAACTATGCTATTCAGGCCAAAAAGGCTTATGATAATGATGAATTTATGGAAGAAACTAGTGATACAACAAATGATATCTTCCTTAATGATTATGAGGTTAATAAACCTGGTTGCTTCAGCATAACCTATCCTTCAGTGAATGATACAGGCATGTCATTCATATATGATACTACCTTCTCAAATGACTCTCCATTTGATTTTTTGGGTGGATCAATGACCAATTTATCAAGAACTGGAACAGATGAAACCTTTGGGTCTGTTGATAATTTGTCACTTGATGACTTCTATTAA 987 0.3941 MMMNQRQGEKKQLQKTEACDLRAGVGAEHSLVNVSGENNITTNNRGSDPIHDYYDQNHYYHHQLGLVHFGNVNKKKRMARQRRSSTNTTFMYQLNPFSSKQTPVTPPPPPPFLLPPTTSHVQIPPSPACETDHGKLKFLFQKELKNSDVSSLRRMVLPKKAAETFLPALESKEGILIRMDDLDGIHVWNFKYRYWPNNNSRMYVLENTGDFVNTHGLRLGDSIMVYQDTQNNNYAIQAKKAYDNDEFMEETSDTTNDIFLNDYEVNKPGCFSITYPSVNDTGMSFIYDTTFSNDSPFDFLGGSMTNLSRTGTDETFGSVDNLSLDDFY 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0196 328 Pfam B3 DNA binding domain 140 232 IPR003340 GO:0003677
Lal10g0196 328 SUPERFAMILY DNA-binding pseudobarrel domain 138 229 IPR015300 -
Lal10g0196 328 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR FUS3 22 328 - -
Lal10g0196 328 ProSiteProfiles B3 DNA-binding domain profile. 140 242 IPR003340 GO:0003677
Lal10g0196 328 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 22 328 IPR044800 GO:0003700
Lal10g0196 328 CDD B3_DNA 138 240 IPR003340 GO:0003677
Lal10g0196 328 Gene3D - 136 255 IPR015300 -
Lal10g0196 328 SMART B3_2 140 242 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0196 Lal-Chr10 2526458 2531021 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g0196 61 328 B3 DNA Binding Superfamily AT3G26790 52.961 1.59e-83 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lal10g0196 B3 4.8e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g0196 - - gmx:100783961 429.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g0196 10 2526458 2531021 Lal10g0196 10 2526458 2531021 ECH