Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0165 ATGGCTCCAAAAAGAGGTGCTAAAGCTCCCATTGTAGCTGCGAAGAAGAAACAGGATAATAAGGTTGTGAATCCATTGTTTGAGAAGCGTCCTAAGCAGTTTGGGATTGGAGGAGCATTACCTCCTAAGAGAGATTTGACTAGATTTGTGAAATGGCCTAAGACCGTTCAAATTCAGAGGAAGAAGAGAATTCTGAAGCAAAGGTTGAAGGTTCCACCAGCATTAAACCAGTTTACTAAGACACTTGATAAAAACCTTGGTACAACCAACCTTTTCAAGGTGCTCCTCAAGTACAGGCCTGAGGATAAAGCTGAAAAGAAAGAGCGTCTTTTGAAAAGGGCTCAGGCAGAGGCTGATGGAAAACCGGTTGAAGCAAAGAAGCCTATTGTTGTGAAATATGGACTCAATCATGTTACCTACCTTATTGAGCAGAACAAAGCACAGCTTGTTGTGATTGCTCATGACGTCGACCCAATTGAGCTTGTAGTATGGCTTCCAGCATTGTGCAGGAAAATGGAGATTCCGTACTGTATTGTCAAGGGCAAAGCACGCCTGGGAACAGTTGTCCATAAGAAAACTGCATCTGTTTTGTGTTTGACAACTGTCAAGAATGAAGACAAGTTAGAGTTCAGTAGAATCTTGGAGGCCATCAAGGCTAACTTCAATGACAAGTATGATGAATACAGAAAGAAGTGGGGTGGTGGGATTATGGGTTCCAAATCCCAAGCCAAAACCAAGGCCAAGGAAAGGCTCATTGCCAAGGAAGCAGCTCAAAGATTGACTTAG 786 0.43 MAPKRGAKAPIVAAKKKQDNKVVNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKTVQIQRKKRILKQRLKVPPALNQFTKTLDKNLGTTNLFKVLLKYRPEDKAEKKERLLKRAQAEADGKPVEAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGTVVHKKTASVLCLTTVKNEDKLEFSRILEAIKANFNDKYDEYRKKWGGGIMGSKSQAKTKAKERLIAKEAAQRLT 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0165 261 ProSitePatterns Ribosomal protein L7Ae signature. 169 186 IPR004037 GO:0042254|GO:1990904
Lal10g0165 261 PANTHER BNAA03G47020D PROTEIN 2 259 - -
Lal10g0165 261 PRINTS Ribosomal protein L7A/RS6 family signature 131 145 IPR018492 -
Lal10g0165 261 PRINTS Ribosomal protein L7A/RS6 family signature 150 163 IPR018492 -
Lal10g0165 261 PRINTS Ribosomal protein L7A/RS6 family signature 166 176 IPR018492 -
Lal10g0165 261 PRINTS Ribosomal protein L7A/RS6 family signature 176 190 IPR018492 -
Lal10g0165 261 Gene3D - 52 236 IPR029064 -
Lal10g0165 261 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 121 208 IPR004038 -
Lal10g0165 261 PRINTS Ribosomal protein L7A family signature 31 48 IPR001921 -
Lal10g0165 261 PRINTS Ribosomal protein L7A family signature 48 65 IPR001921 -
Lal10g0165 261 PRINTS Ribosomal protein L7A family signature 68 87 IPR001921 -
Lal10g0165 261 PRINTS Ribosomal protein L7A family signature 127 147 IPR001921 -
Lal10g0165 261 PRINTS Ribosomal protein L7A family signature 188 212 IPR001921 -
Lal10g0165 261 PRINTS Ribosomal protein L7A family signature 220 240 IPR001921 -
Lal10g0165 261 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 2 259 - -
Lal10g0165 261 SUPERFAMILY L30e-like 91 232 IPR029064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0165 Lal-Chr10 1921099 1925589 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g0165 1 261 Cytoplasmic Ribosomal Protein Gene Family AT3G62870 84.291 1.68e-163 451
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g0165 K02936 - gmx:100819609 478.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g0165 10 1921099 1925589 Lal10g0165 10 1921099 1925589 ECH