Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0155 ATGGAATGGGATTTGAAAGAGTTTACTTTTGATCCATCTATGTTGCAGGATGATAAGAATTGCTTGGAATTGATAATGAATCATAATAATAAGAAGAAGAATGAAGCTGCTTCAGTGGATTTGATTGAAAACTCAGCATCAGAAACACCTAAGGGATTAAAAGATTCAAAGACTGTGTTATCATCTAAAGGGTTATTGAAGCAATTGCACAATGGATCACAGAACTTGTGTTGTTTGGTTGATGGATGCAACTTTGATCTCAGTGATTGTAGAAAGTATCATAAGCGTCATAGGGTCTGTGAAAAGCACTCCAAAACCTTTGTTGTGTTGGTAGGGGGTAAGCAGCAGAGATTCTGCCAGCAATGTAGCAGTCAAATGCCGTCTGATGCAGTCCAAATGCTGTCTGATGCGGTTGCGTTGCAGTCTGATGCAGCCACATCATTGTTTCATGCACTTGGAGAGTTTGATGATATCAAAAGGAGTTGCAGGAAACGCCTTGATGGTCATAATAGGCGCCGGAGGAAACCTCAGCCGCCATCTATTTTCATTGCTGCTGAGAAATTTCTGTACAATTACAAAGGTTGGTGTGTCGCATTCCGAGATTCTACGATGACTTTCACTCTGGCAGCTCAGGTTAAGAGGCTCCCGCTTACTGGGTCACGAATTAATATAGACTTTGGCGCTGACATACATTTCTACAACTTAGAGCCTATAATCCTGCAATTTGGTAGCCCTCAGACATATAATATGTGGCCTGCCACTGCCAAAACTGGAGCTGAATCGGGTTACGATGATCGCCGACTTTTATATAGAATTGACAAGCATAATAAGCAAGAGAAGAAACATTTTCTGTGGCAAGAAAATGGTCCTAAAGCAAGCAACTGTTATGAAGAAATGCTTGGAACTCCAATCTACCAGCAAACTTTTGGTGGAAATGGCATAGGTAAAGTGTCTTCTGATAACAAACTTGAATCTTTTGACTCAAGTTGTGTTCTCTATCTTCTGTCAACACTAAAAACACAAAACTCAGATTTGAGATTGGTGCAGTCTGGCACCACCTATCCAATACAATCTCCATCTGGATATGTGAATTTGGATGCTGTGGATGAGAACTTGTGCTCCGAAAGGCCGATAGATAAGCCTATTAGCCCGGTATTTGTTGTTGATGCTAACATAGCCGATCTTCACTGCGACTCGATGCAGCAAATGGGACATGATAATAATAAAGATAAACTTGTTAAGCTTTCAGTAAGGGTGCTTTGTTCTAAATAA 1272 0.4064 MEWDLKEFTFDPSMLQDDKNCLELIMNHNNKKKNEAASVDLIENSASETPKGLKDSKTVLSSKGLLKQLHNGSQNLCCLVDGCNFDLSDCRKYHKRHRVCEKHSKTFVVLVGGKQQRFCQQCSSQMPSDAVQMLSDAVALQSDAATSLFHALGEFDDIKRSCRKRLDGHNRRRRKPQPPSIFIAAEKFLYNYKGWCVAFRDSTMTFTLAAQVKRLPLTGSRINIDFGADIHFYNLEPIILQFGSPQTYNMWPATAKTGAESGYDDRRLLYRIDKHNKQEKKHFLWQENGPKASNCYEEMLGTPIYQQTFGGNGIGKVSSDNKLESFDSSCVLYLLSTLKTQNSDLRLVQSGTTYPIQSPSGYVNLDAVDENLCSERPIDKPISPVFVVDANIADLHCDSMQQMGHDNNKDKLVKLSVRVLCSK 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0155 423 SUPERFAMILY SBT domain 147 181 IPR036893 GO:0003677|GO:0005634
Lal10g0155 423 Pfam SBP domain 147 175 IPR004333 GO:0003677
Lal10g0155 423 Pfam SBP domain 78 124 IPR004333 GO:0003677
Lal10g0155 423 ProSiteProfiles Zinc finger SBP-type profile. 75 176 IPR004333 GO:0003677
Lal10g0155 423 Gene3D - 69 163 IPR036893 GO:0003677|GO:0005634
Lal10g0155 423 PANTHER TRANSCRIPTION FACTOR SBP FAMILY-RELATED 147 196 - -
Lal10g0155 423 PANTHER TRANSCRIPTION FACTOR SBP FAMILY-RELATED 22 123 - -
Lal10g0155 423 PANTHER TRANSCRIPTION FACTOR SBP FAMILY-RELATED 237 406 - -
Lal10g0155 423 SUPERFAMILY SBT domain 76 124 IPR036893 GO:0003677|GO:0005634
Lal10g0155 423 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 147 196 IPR044817 GO:0003677
Lal10g0155 423 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 237 406 IPR044817 GO:0003677
Lal10g0155 423 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 22 123 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0155 Lal-Chr10 1803280 1806062 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g0155 78 258 SBP-box Gene Family AT5G50670 42.541 1.25e-34 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lal10g0155 SBP 1.9e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g0155 - - gmx:100798317 377.481
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g0155 10 1803280 1806062 Lal10g0155 10 1803280 1806062 ECH