Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0146 ATGACAATATATTTGCCTGATTTCAAAGCTATCCATTTTTCCAGGGAAGTCTTTTGTCCCATTGTTGGTTGTGGAGCACGCTTGGTTTCTATGGAGGACTTTGAAAATCACTATAATTCAAGGCACACTCCAGTTTGTTCAGTGTGTTCCAGAGTCTATCCAACATCACGTCTTCTTAGCATTCATATATCTGAAGCTCATGATTCTTTCTTTCAGGCAAAAGTTGCACGTGGCTATGACATGTATGAATGCTTAGTAGAAGGGTGTGGTTTGAAATTCAAAAGCTACAATAGTAGACAATATCATCTAGTTGACAAACATAAATTCCCTACCACATTTGAGTTTTACAAGAAGGCTCGATCATCGAAGAAACACAGGTTGAAGTCACAACGCAAACAAGCTTATCATAAAGAAGATGCTTCAGGATTGATGGAAGTAGAAAATGCAGCCATAGATGACCTTGCTTCGGCCGTCTCAAAATTGAGCACTTCTTATTCGACTCCTTCATCTATCAGCTTTGGTCACCGCCGCAAAGGTATGACATTTGTCCCTCGATCTGTTCGACATGGAAGTGGATCAAACCCTTGA 588 0.4031 MTIYLPDFKAIHFSREVFCPIVGCGARLVSMEDFENHYNSRHTPVCSVCSRVYPTSRLLSIHISEAHDSFFQAKVARGYDMYECLVEGCGLKFKSYNSRQYHLVDKHKFPTTFEFYKKARSSKKHRLKSQRKQAYHKEDASGLMEVENAAIDDLASAVSKLSTSYSTPSSISFGHRRKGMTFVPRSVRHGSGSNP 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0146 195 Pfam Zinc finger, C2H2 type 45 67 IPR013087 -
Lal10g0146 195 ProSitePatterns Zinc finger C2H2 type domain signature. 46 67 IPR013087 -
Lal10g0146 195 ProSitePatterns Zinc finger C2H2 type domain signature. 84 107 IPR013087 -
Lal10g0146 195 SMART c2h2final6 82 107 IPR013087 -
Lal10g0146 195 SMART c2h2final6 44 67 IPR013087 -
Lal10g0146 195 SMART c2h2final6 17 42 IPR013087 -
Lal10g0146 195 PANTHER ZINC FINGER PROTEIN 511 14 189 - -
Lal10g0146 195 PANTHER UNCHARACTERIZED 14 189 IPR039258 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0146 Lal-Chr10 1694599 1695992 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g0146 14 187 C2H2 Transcription Factor Family AT5G14140 66.120 1.73e-81 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal10g0146 zf-C2H2 0.0058 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g0146 - - lang:109342491 351.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g0146 10 1694599 1695992 Lal10g0146 10 1694599 1695992 ECH
Lal8g1406 8 18157219 18160775 Lal10g0146 10 1694599 1695992 LSH