Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0078 ATGATGGAGAGCGTAGTTGTTATTGAAGAAGCTGCTGAACTACCAGATTTACCTCCGCTACCTGCTGAGCTGCCTGGTATTGAAAAAGGTGCTGAGCTACCACCTTTACTTCCACTGCCTCCTAACGTGCCACCCAATATTGATACAGAACAAGTGGCTCCTACTGTGTATTCTGTTATCAGTAGGGAAGGGGTTGGGACCATAGGAAAACGCATACCACTGCTTGCCAATCACTTCAAAGTTGCTGTTAATGTTCCAGATGCAACATTTTTCCAGTATAATGTTACTGTTACTTCGGAAGATAAAAGAAATATTGAAAGCAAGGGCATCAAGAGAAAACTGATAGATAGGCTGTACCAAATATACTCTTCTGAACTCGGTGGGAAAAGTTTTGCGTACGACGGAGATAGAACTTTGTGTACAGTGGGTTCTCTGCCACTTGATAAGTTTGAGTTCAAAGTATTGCTTGAGGAGTCATATGCAAAGCATAGTGCTGAGAGTCCTTGTGCTAATGGAAAGCCTCGTGAGGAAACTAAAAGATCAAAATGCTCTTTTCAATCGAATACATTCACGGTGGAGATAAGTTTTGCTGCCAAAATACCCCTTCGGTCCATTGCTCTTGCCCTCGATGGGGTTGAGTCAGATGCTAATTCTCAGGATGCTTTAAGAGTGCTTAATATTGTACTGAGGCAGCAAGCAGCTAACAGAGGGTGTCTCTTGGTACGACAATCATTTTTTCACGACGACTCAAGGAATTTCACCGATGTTGGAGGTGGAGTAACAGGTGTTCGGGGTTTTCATTCCAGTTTTCATCTCACACAGGCTGGGTTGGCTCTCAATATGGATATGTCCACAACGATGATCTTAAAGCCTGGACCTGTAATTGATTTTCTCCTATTCAACCAGAATGTGAGGGAACCCCGTAATATTGACTGGACAAAGGCCAAAAAAATGCTTAAAAATTTAAGGGTGCGTGCAACACATAGTCACCAGGAATTTAAAATCTCTGGCTTGAGTGGGAAACCCTGCATTCAGCAACTTTTTAGTATGAAGTTGAGAAACGTTGATAACAGTAATGGAGTTCAGACAGTGGATATTACTGTGTTTGAGTATTTTGCTAAACACTGTGATATACAGCTTACCTCATCTGCTTATCTTCCCTGTCTTGATGTCGGGAAGCCAAATCGGCCTATCTATCTGCCTCTGGAGTTGTGCTCACTTGTTTCCCTCCAACGGTATACAAAGGCATTATCTCCAATGCAGAGAGCATCATTGGTAGAAAAATCACGCCAGAAGCCTCAAGAGAGAGTTAAAATTGTAACAAATGCTCTAGGAAATTATTGCTATGATGATGACCCTGTCCTTGCTGCTTGTGGCATTTCTATTGAGAGAAAAATGACCGAGGTTGAAGGTCGAGTTCTTGAGACACCAAAGTTGAAGGTTGGTAATAATGGTGACTGTTTTCCCCAAAATGGAAGGTGGAGCTTTACTAAAAAGGCACTTCTACAACCCTCACAAATTGATTACTGGGCTGTTGTTAACTTCTCTGCAAAATGTGATACTAGTTACATATCAAGGGAGCTGATCAGATGTGGAATGAGCAAGGGCATTAGCATTGAACGACCATATACATTAATTGAGGAAGAACCACAGTTGAGAAGATCTGACCCTGTTACAAGGGTTGAAAATATGTTTGAGCTTCTTATATCAAAACTTACAAGAGAACCAAAGCTAATTCTGTGTGTGCTGCCAGAAAGGAAAAATTGTGACATTTATGGGCCCTGGAAGAAGAAGTGTCTCAGTGAATTTGGTGTTGTCACACAGTGCATTTGCCCTGTTAAGATCACTGACCAATACCTTAATAATGTACTTCTCAAAATCAATTCTAAGCTTGGAGGAATAAATTCTTTGCTGGCAATTGAGCATTCTGGGCATCTTCCTCTGGTTAAAGATACCCCGACAATGATTTTGGGGATGGATGTCTCTCACGGTTCCCCTGGTCGGTCAGATATACCATCAATAGCAGCAGTTGTTGGATCTCGATGTTGGCCACTTATTTCAAGGTATAGAGCATCTGCAAGAACACAGTCATCTAAGGTGGAGATTATTGATGCTCTATACAAGCCTTTGGATAATGGGAATGATGATGGTATTGTCAGACCAAGATCTAAGGTTTCACCAAAACATAATTGCGAGTGGCATTGGGAGGTTGATATGAGCCATGATTGTGCAACTGCAAAAGAGTTGTTTCTAGATTTCTATGAATCAAGTCAACGTCGCAAACCAACTCAAATCATTGTCTTCAGGGATGGAGTCGGTGAATCACAATTTAATCAGGTTTTGAATATTGAGCTTAACCAGATAATAAAGGCCTATCAACATTTAGGGGAAGTTGATGTTCCCAAGTTCACTGTGATCGTGGCACAGAAGAATCATCATACAAAGTTGTTTCAGGCTAATGGGCTGGAAAATGTTCCTCCCGGGACAGTTGTCGACACAAAAGTCACGCATCCAAGAAATTATGATTTTTACATGTCTGCTCATGCTGGGATGTTTGGAACCACTAGGCCTGTGCATTATCATGTGTTGCTTGATGAGATTGGTTTCTCGGCCGATGACTTGCAAAATTTGATCCATTCGCTGTCTTATGTGAACCAAAGGAGCACAAATGCAACCTCAGTTGTGGCACCTATACACTATGCCCACCATGCTGCAGCTCAAATGGGGAGATTTATGAATTTTGATGATTTATCAGAAGCATCAAGTGTTACTTCAGAGGGAAATGTCCCCATCCCAGAGCTTCCAAGGTTGCACAGTAATGTCAAAAGTAGCATGTTCTTCTGTTGA 2847 0.4176 MMESVVVIEEAAELPDLPPLPAELPGIEKGAELPPLLPLPPNVPPNIDTEQVAPTVYSVISREGVGTIGKRIPLLANHFKVAVNVPDATFFQYNVTVTSEDKRNIESKGIKRKLIDRLYQIYSSELGGKSFAYDGDRTLCTVGSLPLDKFEFKVLLEESYAKHSAESPCANGKPREETKRSKCSFQSNTFTVEISFAAKIPLRSIALALDGVESDANSQDALRVLNIVLRQQAANRGCLLVRQSFFHDDSRNFTDVGGGVTGVRGFHSSFHLTQAGLALNMDMSTTMILKPGPVIDFLLFNQNVREPRNIDWTKAKKMLKNLRVRATHSHQEFKISGLSGKPCIQQLFSMKLRNVDNSNGVQTVDITVFEYFAKHCDIQLTSSAYLPCLDVGKPNRPIYLPLELCSLVSLQRYTKALSPMQRASLVEKSRQKPQERVKIVTNALGNYCYDDDPVLAACGISIERKMTEVEGRVLETPKLKVGNNGDCFPQNGRWSFTKKALLQPSQIDYWAVVNFSAKCDTSYISRELIRCGMSKGISIERPYTLIEEEPQLRRSDPVTRVENMFELLISKLTREPKLILCVLPERKNCDIYGPWKKKCLSEFGVVTQCICPVKITDQYLNNVLLKINSKLGGINSLLAIEHSGHLPLVKDTPTMILGMDVSHGSPGRSDIPSIAAVVGSRCWPLISRYRASARTQSSKVEIIDALYKPLDNGNDDGIVRPRSKVSPKHNCEWHWEVDMSHDCATAKELFLDFYESSQRRKPTQIIVFRDGVGESQFNQVLNIELNQIIKAYQHLGEVDVPKFTVIVAQKNHHTKLFQANGLENVPPGTVVDTKVTHPRNYDFYMSAHAGMFGTTRPVHYHVLLDEIGFSADDLQNLIHSLSYVNQRSTNATSVVAPIHYAHHAAAQMGRFMNFDDLSEASSVTSEGNVPIPELPRLHSNVKSSMFFC 948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0078 948 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 746 947 - -
Lal10g0078 948 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 53 720 - -
Lal10g0078 948 SMART DUF1785_2 239 291 IPR014811 -
Lal10g0078 948 CDD Piwi_ago-like 453 907 IPR045246 -
Lal10g0078 948 ProSiteProfiles Piwi domain profile. 578 913 IPR003165 GO:0003676
Lal10g0078 948 Pfam N-terminal domain of argonaute 70 229 IPR032474 -
Lal10g0078 948 Gene3D paz domain 285 413 - -
Lal10g0078 948 Gene3D - 473 639 - -
Lal10g0078 948 Pfam Piwi domain 578 912 IPR003165 GO:0003676
Lal10g0078 948 Pfam PAZ domain 295 425 IPR003100 GO:0005515
Lal10g0078 948 PANTHER PROTEIN ARGONAUTE 6 53 720 - -
Lal10g0078 948 PANTHER PROTEIN ARGONAUTE 6 746 947 - -
Lal10g0078 948 CDD PAZ_argonaute_like 291 408 - -
Lal10g0078 948 SMART Piwi_a_2 578 913 IPR003165 GO:0003676
Lal10g0078 948 Gene3D - 645 948 IPR036397 GO:0003676
Lal10g0078 948 Pfam Argonaute linker 1 domain 241 288 IPR014811 -
Lal10g0078 948 ProSiteProfiles PAZ domain profile. 316 409 IPR003100 GO:0005515
Lal10g0078 948 SUPERFAMILY PAZ domain 286 449 IPR036085 GO:0005515
Lal10g0078 948 SUPERFAMILY Ribonuclease H-like 570 911 IPR012337 -
Lal10g0078 948 Pfam Argonaute linker 2 domain 435 480 IPR032472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0078 Lal-Chr10 893355 903518 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g0078 27 948 Eukaryotic Initiation Factors Gene Family AT1G48410 34.504 4.92e-154 480
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g0078 K11593 - gmx:100778875 1387.86