Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0075 ATGGGTCGTTGTCGAGCCACGTCTCGTCCTCCTCTTCCTGACGATGATCCCAACCTAAGAGCCAACTCAGCCAAGAGAAAAAGAGCTGGTTGGAATGTAGATATCTTAGACAATTCATCTACAGGCCAAGGAATACTAACTGATGTGAAAGTATCTCTATACCACTGCAATTATTGCAACAAAGATATTTCCGGGAAGATTCGCATTAAATGTGTTGTTTGTCAAGATTTTGATCTCTGCGTAGAATGCTTCTCTGTTGGCGCTGAGGTGACACCTCACAAAAGCAGTCATCCATATAGGGTTATGGACAATCTATCTTTTCCACTTCTATGTCCGGACTGGAATGCAGATGAAGAGATGTTACTTCTAGAGGGAATTGAAATGTATGGATCTGGGAATTGGAATGAAGTTGCCGAATTTGTTGGAACAAAAAGCAAATCTCAATGTATTGACCACTATAATGCTGTATATATGAATTCACCATGCTGTCCTCTCCCTGATTTGTCTCATGTTATGGGAAAGAGCAGAGAGGAACTCCTTGCCATGGCGAAGGGACGTGAAGTCAAGAAAGAGTTTCCTCCGTCTTCAGAACTTACTCTGAAAGAAGAACCTCCCTTCTCTGAAGGAATAAACTCTGAAGAATCTAAGATGGCAGAAACCACTAATCAAACAATGTCTAAGTTAAGCTCAGTATGCAGCAAAACTTACTCAAGTACAATTAAGAAGGCTTCCAACATGAACCAGAATAATGATGGAGTTAAGGTGGAAGAATCTCAAGTGGATCGGAGCATTGGAGAGAAGAAACCTAAATTATCCGGGGAAGATAGACCTTCTATGACAGAGTTGAGTGGATACAATTTTAAGAGAGAGGAATTTGATATAGAATATGACAACGATGCAGAGCAAACATTGGCGGAAATGGAATTCAAGGATACTGATACTGACAGTGAACGGGAAACGAAACTGCATGTGCTCCGTATCTACTTAAAAAGGTTAAATGAGCGAAAGCGCAGAAAGGATTTTGTACTTGAAAGAAATTTTCTTTCTCCGGATCCTTTTGAGAAATCTCTTTCAGCTGGAGAGCTTGAAATATGTCAACGCTACAAGGTCTTCATGCGGTTTCACTCAAAAGAAGAGCATAAGGAGTTGCTAAAAAATATTATTGAAGAACACCGACTTGTCAAAAGAATAAAAGATTTACAGGAAGCTCGTACTGCTGGTTGTCGAACTGCTGCTGAAGCTTATCAATTTGTCGAAGATAAGAGAACAAAGGTAGCCGAACAGAGCGCTGGTAGAGAAAGTAGTCAGGGTACAAGCACCAAGATTTTACGGAGGCCAAATTCTGTCAAAGGAGACGTTGATAGCAGCCCACAGGGACTTGTGAAGGGGACTACAGGTCCGTTTTCGAGTGTCAAAGATCCACCGGCTATACAAGCTATCTCAAATTCCCTAGAAGAATGGGATATTAGTGATTTCACAGGGGCTGAATTACTATCTGAATCTGAAAAAAAGCTTTGTAATGAGATCAGAATACTACCATCACACTATCTCAACATGCTACAGATAATGTCATTAGAAATTTCAAAGGGAAGTGTTACAAAGAAATCTGATGCACATACACTGTTCAGGGTAGAGCCAAGCAAGGTTGATAGAGTCTATGATATGCTTCTTACAAAGGGTATTTTTTAA 1689 0.4044 MGRCRATSRPPLPDDDPNLRANSAKRKRAGWNVDILDNSSTGQGILTDVKVSLYHCNYCNKDISGKIRIKCVVCQDFDLCVECFSVGAEVTPHKSSHPYRVMDNLSFPLLCPDWNADEEMLLLEGIEMYGSGNWNEVAEFVGTKSKSQCIDHYNAVYMNSPCCPLPDLSHVMGKSREELLAMAKGREVKKEFPPSSELTLKEEPPFSEGINSEESKMAETTNQTMSKLSSVCSKTYSSTIKKASNMNQNNDGVKVEESQVDRSIGEKKPKLSGEDRPSMTELSGYNFKREEFDIEYDNDAEQTLAEMEFKDTDTDSERETKLHVLRIYLKRLNERKRRKDFVLERNFLSPDPFEKSLSAGELEICQRYKVFMRFHSKEEHKELLKNIIEEHRLVKRIKDLQEARTAGCRTAAEAYQFVEDKRTKVAEQSAGRESSQGTSTKILRRPNSVKGDVDSSPQGLVKGTTGPFSSVKDPPAIQAISNSLEEWDISDFTGAELLSESEKKLCNEIRILPSHYLNMLQIMSLEISKGSVTKKSDAHTLFRVEPSKVDRVYDMLLTKGIF 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0075 562 MobiDBLite consensus disorder prediction 242 281 - -
Lal10g0075 562 ProSiteProfiles Myb-like domain profile. 114 157 IPR001005 -
Lal10g0075 562 Pfam Zinc finger, ZZ type 54 94 IPR000433 GO:0008270
Lal10g0075 562 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 114 161 IPR017930 -
Lal10g0075 562 SMART zz_5 50 95 IPR000433 GO:0008270
Lal10g0075 562 Gene3D - 487 557 IPR036388 -
Lal10g0075 562 Gene3D - 47 102 IPR043145 -
Lal10g0075 562 MobiDBLite consensus disorder prediction 425 472 - -
Lal10g0075 562 ProSiteProfiles SANT domain profile. 109 161 IPR017884 -
Lal10g0075 562 MobiDBLite consensus disorder prediction 213 227 - -
Lal10g0075 562 MobiDBLite consensus disorder prediction 255 275 - -
Lal10g0075 562 MobiDBLite consensus disorder prediction 1 25 - -
Lal10g0075 562 ProSitePatterns Zinc finger ZZ-type signature. 56 83 IPR000433 GO:0008270
Lal10g0075 562 CDD ZZ_ADA2 54 102 IPR041983 -
Lal10g0075 562 SUPERFAMILY Homeodomain-like 107 160 IPR009057 -
Lal10g0075 562 SMART sant 110 159 IPR001005 -
Lal10g0075 562 Pfam Myb-like DNA-binding domain 113 154 IPR001005 -
Lal10g0075 562 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 15 561 - -
Lal10g0075 562 Gene3D - 109 159 - -
Lal10g0075 562 PANTHER TRANSCRIPTIONAL ADAPTER ADA2B 15 561 IPR034318 GO:0003713|GO:0006357|GO:0035065
Lal10g0075 562 ProSiteProfiles Zinc finger ZZ-type profile. 51 107 IPR000433 GO:0008270
Lal10g0075 562 CDD SANT 114 154 IPR001005 -
Lal10g0075 562 SUPERFAMILY RING/U-box 53 117 - -
Lal10g0075 562 ProSiteProfiles SWIRM domain profile. 478 562 IPR007526 GO:0005515
Lal10g0075 562 MobiDBLite consensus disorder prediction 429 465 - -
Lal10g0075 562 SUPERFAMILY Homeodomain-like 480 562 IPR009057 -
Lal10g0075 562 MobiDBLite consensus disorder prediction 187 227 - -
Lal10g0075 562 PIRSF Txn_adaptor_ADA2 46 562 IPR016827 GO:0003713|GO:0006357|GO:0035065
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0075 Lal-Chr10 864850 873501 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g0075 1 561 EF-hand Containing Proteins AT3G07740 54.371 0.0 571
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lal10g0075 Myb_DNA-binding 1.6e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g0075 K11314 - gmx:100779424 852.047