Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0071 ATGGAACCATCACAAAATAACACAGATCAATTCATAGTTGAAGACCTCCTTGACTTTCCCAATGATGATGATAGTATCATTATTGATGCTACCTTTGACTCTGTCCCTGAAAACTCTACTCATTCTTCCTCTCTAACTTCCTTTTCTGACCCCATTTCCATCTCAGATACTGGTTCTCACAATCTTGTTGATGCCCATTTATGCAGTGATCTTTGTGTTCCGGTATATATTACTTATATCCTTCCATATATCATCAACAATGTTGGATGCATAGTTAGATGTGTGGTTCCGGTTCCGATATACACATTGCGGTTGCACTCACTGACGAAATCGTATCGCACCATAATTGTGGATGATGATGATATAGCGGAGATGGAATGGCTTTCAAATTTTGTGGAGGAATCCTTTTCATGTGAGGACCTACAAAAGTTGGAGCTTATATCGGGCATAAAGGCACGAAACGACGACGCATCAAAGTGCAACAAATTTCATCTTAACCAAAACAACCCATTGGAAGTGTTTGTTCCGACCAAAGGTCGTAGCAAAAGGCCCCGCATGCCGCCATGCAATTGGACCTCACGCCTACTCGTCTTCACCCCGCAGACATCATTATCTTCGAACCCTAAAATCATTATCCAAAATCCGACCATGTCATCTATCGCGATTTCGATTATCGGGAAAAAGTCAACAAAAGTGGGGTCAAGGAAGAGAGATATTAGCAATTGTAGTGGTGGAGATGGACGCAAGTGTATGCATTGTGCAGCAGATAAAACGCCACAATGGCGGACTGGGCCTATGGGCCCAAAAACTTTATGCAATGCATGTGGTGTTAGATACAAGTCGGGTCGTTTGGTTCCTGAATACCGGCCTGCATCAAGCCCGACATTTGTGCTCGCTAAGCACTCGAATTCGCACCGAAAGGTGTTGGAGCTAAGAAGACAAAAGGAGATGGTAATGGAGGCCAACAACAATTCATGCAACATCATCATCAATTCATGA 999 0.4314 MEPSQNNTDQFIVEDLLDFPNDDDSIIIDATFDSVPENSTHSSSLTSFSDPISISDTGSHNLVDAHLCSDLCVPVYITYILPYIINNVGCIVRCVVPVPIYTLRLHSLTKSYRTIIVDDDDIAEMEWLSNFVEESFSCEDLQKLELISGIKARNDDASKCNKFHLNQNNPLEVFVPTKGRSKRPRMPPCNWTSRLLVFTPQTSLSSNPKIIIQNPTMSSIAISIIGKKSTKVGSRKRDISNCSGGDGRKCMHCAADKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLAKHSNSHRKVLELRRQKEMVMEANNNSCNIIINS 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0071 332 Pfam GATA zinc finger 250 283 IPR000679 GO:0006355|GO:0043565
Lal10g0071 332 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 246 308 - -
Lal10g0071 332 ProSiteProfiles GATA-type zinc finger domain profile. 244 280 IPR000679 GO:0006355|GO:0043565
Lal10g0071 332 PANTHER GATA TRANSCRIPTION FACTOR 115 321 - -
Lal10g0071 332 PANTHER GATA TRANSCRIPTION FACTOR 6 75 - -
Lal10g0071 332 SMART GATA_3 244 294 IPR000679 GO:0006355|GO:0043565
Lal10g0071 332 ProSitePatterns GATA-type zinc finger domain. 250 275 IPR000679 GO:0006355|GO:0043565
Lal10g0071 332 Gene3D - 245 295 IPR013088 GO:0006355|GO:0008270
Lal10g0071 332 CDD ZnF_GATA 249 296 IPR000679 GO:0006355|GO:0043565
Lal10g0071 332 PIRSF Txn_fac_GATA_plant 2 76 IPR016679 GO:0003677|GO:0005634|GO:0045893
Lal10g0071 332 PIRSF Txn_fac_GATA_plant 102 330 IPR016679 GO:0003677|GO:0005634|GO:0045893
Lal10g0071 332 PANTHER GATA TRANSCRIPTION FACTOR 115 321 - -
Lal10g0071 332 PANTHER GATA TRANSCRIPTION FACTOR 6 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0071 Lal-Chr10 817880 819334 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g0071 120 317 C2C2-Gata Transcription Factor Family AT5G25830 58.140 4.82e-74 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lal10g0071 GATA 4.5e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g0071 - - gmx:100784144 318.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g0071 10 817880 819334 Lal10g0071 10 817880 819334 ECH