Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0047 ATGGGTATCATAAGCTTAGAAGAGATCAAAAATGAAAATGTTGATTTGGAACGAATTCCAATAGAGGAAGTGTTTGAGCAACTAAAATGTTCAAGAGCAGGACTCACATCAGAAGAAGGAGACAACAGGATTCAAGTTTTTGGACCAAACAAATTAGAAGAAAAAAAGGAGAGTAAGTTTTTGAAGTTCTTGGGGTTTATGTGGAACCCTTTATCTTGGGTTATGGAAGCTGCTGCTATAATGGCTATTGCTTTGGCAAATGGTAATGGAAGACCACCAGATTGGCAAGATTTTGTTGGTATTATTGCTCTTTTGGTCATTAACTCCACAATCAGTTTTATTGAAGAAAACAATGCTGGTAATGCTGCTGCTGCTCTTATGGCTGGTTTAGCTCCCAAGACTAAGGCACGAGCTGCCATTAGGGAGGTCCATTTCCTTCCATTCAATCCTGTAGACAAGAGAACTGCTCTAACTTACATTGATTCAAATGGAAATTGGCATCGAGCTAGCAAAGGGGCTCCTGAGCAGATAATTGAACTTTGCAACTGCAAAGAGGATGTCAGGAAGAAGGTTCATTCCGTAATTGATAAGTTTGCTGAGCGTGGACTTCGTTCTTTAGGTGTTGCAAGACAGGAAGTACCTGAGAAAACAAAAGACAGTCCTGGTGCACCATGGCAATTTGTTGGTTTGTTACCACTTTTTGATCCTCCAAGGCACGATAGCGCTGAAACCATCCGAAGAGCTCTTAACCTTGGAGTGAATGTTAAGATGATTACAGGAGATCAGCTTGCAATCGGAAAGGAAACAGGCCGAAGGCTTGGAATGGGAACAAACATGTACCCCTCATCTTCATTGCTTGGCCAAGACAAGGATTCTTCTATTTCAGCTCTTCCAGTTGATGAGTTGATAGAAAAGGCTGACGGATTTGCGGGAGTATTTCCCGAACACAAATACGAAATCGTTAAGCGACTTCAAGAGAGGAAGCATATATGTGGAATGACAGGAGACGGTGTGAACGATGCCCCTGCATTAAAGAAAGCAGATATTGGAATTGCTGTTGCTGATGCTACGGATGCTGCTAGAAGTGCTTCGGATATTGTCCTTACTGAACCTGGTCTGAGTGTCATTATTAGTGCAGTGCTCACCAGCAGAGCAATCTTCCAGAGAATGAAGAACTATACGATTTACGCTGTATCAATCACCATTCGTATTGTCTTCGGTTTCATGTTTATTGCACTGATCTGGAAGTTTGATTTTGCACCCTTCATGGTCTTGATTATCGCTATACTAAATGATGGTACGATTATGACAATATCCAAGGATAGAGTAAAACCATCTCCACTTCCAGACAGCTGGAAATTGAGGGAGATATTCGCTACTGGCGTTGTGCTGGGAAGTTATATGGCACTCATGACAGTAGTATTTTTCTGGGCAATGAAAGATACCAACATCTTCCCGACTGCCTTTACGACAAAGAAAGACTACGGAAAAGAAGAGAGGGAAGCACAATGGGCCGCTGCACAAAGGACACTTCACGGTCTTCAGCCTCCCGAAACCTCCAACCTTTTCAACGAGAAGAATAGTTATAGGGAACTTTCGGAGATTGCAGAGCAAGCAAAGAGACGTGCTGAGGTTGCAAGGCTTAGGGAGCTTCATACTCTAAAGGGACATGTTGAGTCAGTGGTGAAGCTGAAGGGACTTGACATCGATACAATTCAGCAGCACTATACGGTTTAA 1737 0.4266 MGIISLEEIKNENVDLERIPIEEVFEQLKCSRAGLTSEEGDNRIQVFGPNKLEEKKESKFLKFLGFMWNPLSWVMEAAAIMAIALANGNGRPPDWQDFVGIIALLVINSTISFIEENNAGNAAAALMAGLAPKTKARAAIREVHFLPFNPVDKRTALTYIDSNGNWHRASKGAPEQIIELCNCKEDVRKKVHSVIDKFAERGLRSLGVARQEVPEKTKDSPGAPWQFVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGQDKDSSISALPVDELIEKADGFAGVFPEHKYEIVKRLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMFIALIWKFDFAPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLREIFATGVVLGSYMALMTVVFFWAMKDTNIFPTAFTTKKDYGKEEREAQWAAAQRTLHGLQPPETSNLFNEKNSYRELSEIAEQAKRRAEVARLRELHTLKGHVESVVKLKGLDIDTIQQHYTV 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0047 578 Gene3D - 100 234 IPR023299 GO:0000166
Lal10g0047 578 Gene3D - 527 578 - -
Lal10g0047 578 PRINTS P-type cation-transporting ATPase superfamily signature 229 240 - -
Lal10g0047 578 PRINTS P-type cation-transporting ATPase superfamily signature 251 261 - -
Lal10g0047 578 PRINTS P-type cation-transporting ATPase superfamily signature 334 353 - -
Lal10g0047 578 PRINTS P-type cation-transporting ATPase superfamily signature 357 369 - -
Lal10g0047 578 PANTHER PLASMA MEMBRANE ATPASE 135 485 - -
Lal10g0047 578 PANTHER PLASMA MEMBRANE ATPASE 1 135 - -
Lal10g0047 578 PANTHER PLASMA MEMBRANE ATPASE 487 558 - -
Lal10g0047 578 Coils Coil 529 549 - -
Lal10g0047 578 Pfam haloacid dehalogenase-like hydrolase 158 348 - -
Lal10g0047 578 Gene3D - 335 510 - -
Lal10g0047 578 SUPERFAMILY HAD-like 226 380 IPR036412 -
Lal10g0047 578 Pfam Cation transporter/ATPase, N-terminus 19 81 IPR004014 -
Lal10g0047 578 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 106 240 IPR023299 GO:0000166
Lal10g0047 578 PRINTS H+-transporting ATPase (proton pump) signature 191 209 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal10g0047 578 PRINTS H+-transporting ATPase (proton pump) signature 306 322 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal10g0047 578 PRINTS H+-transporting ATPase (proton pump) signature 334 350 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal10g0047 578 PRINTS H+-transporting ATPase (proton pump) signature 365 390 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal10g0047 578 PANTHER CALCIUM-TRANSPORTING ATPASE 487 558 - -
Lal10g0047 578 PANTHER CALCIUM-TRANSPORTING ATPASE 135 485 - -
Lal10g0047 578 PANTHER CALCIUM-TRANSPORTING ATPASE 1 135 - -
Lal10g0047 578 SUPERFAMILY Calcium ATPase, transmembrane domain M 14 489 IPR023298 -
Lal10g0047 578 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 309 424 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal10g0047 578 SMART Cation_ATPase_N_a_2 15 87 IPR004014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0047 Lal-Chr10 576515 585361 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g0047 487 578 Primary Pumps ATPases AT2G24520 90.217 1.28e-47 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g0047 K01535 - gmx:100794372 666.766