Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0042 ATGCATGGGGTTGATGATGGTAGCAGAAACCGTACAAGAGTGTATAGGAAAAAGAAGCTTCTTCTCAATGACAAAGTTGAGGTGAGGAGTATGGAAGTAAGTTCTCTAGGGTCATTGAACCCAGGGACAATTATCGGTTGCGGGAAGAGAAAGCGCTATATAAGATATGACAACATTGTAGAAGATGATGGAGTAACTTATTGTGAGCAAGTGGTGAGTGTTTCGGCTGTTTTAGACGGTGGAAATGTCGGCGCTTCGCATTCGTACGAACGCAGGATCATTAGACCAATCCCTCCTATACTTGAGATTGTGGAACATGACCTTCAATTTGGTCTATGTGTTGATGTGGATTATGAGGAAGCTTGGTGGGAAGGAGTTATATTCGATCACGATAATGAAATCGAGGAGAGGAACATATTCTTCCCTGATTTGGGTGATGAAATGAAGATAAGAATTCAACAATTGCGGATCACTCAGGACTGGGATGAAGTTTCTGATAGTTGGAAGCGAAGAGGGAAATGGGCATTCCTCGAGTTAATCGAAGAGATTGCGAGTGAATCCTATATTCCTGTCTCAATCAAACAAATTTACTATGATGTTAGGAAAAGAGATGATTTTTTTGACAGGATTAAGGATTGGACCTGCAATATCAAGGACTTATGGAGAGAGCCGATAATGGAGATCATCAACCACTACACCGATCTCACGATATCGGAAATTTTACATGTCTTAGACCTTCCGACAAGTCTCTTGGAAAAAACAACAGAAAAACATGAATCTGCTGATAATGTTGAAGCCAATATGACTAAACAAGAGTCAAAAATTGGACTTAAAACCAAAGCTAATGTTGAATCAAATGTGGAACATGTTTCTCGTGTAACAGTTGCACTATCATCATCTTCTGTTAAAGATGCTGTAGTTGAACCCGAGATTTGTCCACAAGCTGTTGTCAAATATTACTTATCTGCGACGGAGAACTGCGCGAGTGATAAAAAGAAATGGAGATTGAAAGCTAAGAAGCATTTGTTAGCAGAAGGATGGGTCCTCAAGTACCGAAATAAGAACAAGACGAGGGCTGTGTACAAGTCTCCACAAAATCAGTGCCTAAAAAAACTCAAAGATGCATGCCGAGTATACCTCGAAGCAACGATTCCTCGATGGACTATTGCTGGAATGAGAACTCTTAATGTCTCATCCATTAATGTGGAAGGTGTTGATAGTGATAATATAATGAAGTGTGTGACCAAAATTTTTCAAAAGGACCCTGAATTCAATGTTAGAGATACCTTGCTAGCAACTGCAAGTAGATCAAATCGGAATACAAGTCGGCATCGACACATGGAAATGTCTGACCCTAATAATTTTCATCAGAAACCTCAAAATGTTATATCTTGGTTAGTAGAAAAAAACAAGGTGGTTCCAAGATCCAAAGTTTATTATCAGGGAAATAGAGGCAGGGACCCTGCGGTGGCCGAAGGGAGGATAACTCGGGACGGAATCAAGTGCAGTTGTTGTCACAATATATATGGTATTAATGGCTTTGCTTCCCATGCTAGTGGCAGTAGTGATTTAAGCCCTTCTGGTAATATATTTTTGAAAGATGGAAGATCACTCTTAGATTGCCAAAGAGAAGTGATGTATGATGACAGGACAAGTGAGACAACAGAAAAACCGAGTAATGATTTCGATAAAGACAAAAATGACGACATTTGTTCTATTTGTCGATACGGCGGTGATATCATTTTATGTGACAAATGCCCTTCTGCATTTCATAAGGAGTGCATTGGTTTGAAGGACATCCCTGATGGTCACTGGTTTTGTCCATTATGTCATTGCACGATTTGTCGCAAAATCGCAACCAAGAGCACCGAGGATGGACGTTTTCTTACTTGCACTCAATGCCAACTTAAATATCATGTTGGATGCCTGACAAATCGGGGAGCAGATCAACATCTCGAACAATGGTTCTGCGGAATAAATTGCGAACGGATGTATGTCGGTCTTCGGGAACTATTAGGAAAGGCAATTTCAGTGGGAGAGAAGAATTTAAGTTGGACATTGCTGAAGTTTGAGAACACTCATAGCAGTGATATTGGTAATACTACAAATGAGTTCTTGATAGAGTGTTACAGCAAACTCAGTGTTGCAGCTTTAGCGATGCACGAATGTTTCGTGCCGCAACAAAATCCTTTATCTAGAAGAGATATCACAGTAGACATCAAATTCAGCAGATGGTCAAATCTTCCAAGATTAAATTTCCATGGTTTCTACACTGTACTTTTGGAAAGAAATGAAGAACTAGTTAGTGTAGCAAATATTAGGGTATATGGAGAAAAAGTGGCAGAAGTACCTCTTGTAGGTACAAGACCTCAGTTTCGTCGACTTGGAATGTGTCGTATTTTGATGACCGTGCTCGAAAAGGTGCTCATAAATTTAGGAGTTAAGAGGCTAGTTTTGCCTGCAATTCCAGATACACTAGAAACATGGACAAAGTATTTTGATTTTGTGAGAATGACAAGTTCTGACAGAAAACAGTTTTTGGAACATGTTTTCCTAGAATTTCCTGAAACCATTTTGTGCCATAAGGTCTTAACAAGAAAGAGTACATCCCAAGATTCAGATTTAATGTACCAATATTAA 2640 0.3951 MHGVDDGSRNRTRVYRKKKLLLNDKVEVRSMEVSSLGSLNPGTIIGCGKRKRYIRYDNIVEDDGVTYCEQVVSVSAVLDGGNVGASHSYERRIIRPIPPILEIVEHDLQFGLCVDVDYEEAWWEGVIFDHDNEIEERNIFFPDLGDEMKIRIQQLRITQDWDEVSDSWKRRGKWAFLELIEEIASESYIPVSIKQIYYDVRKRDDFFDRIKDWTCNIKDLWREPIMEIINHYTDLTISEILHVLDLPTSLLEKTTEKHESADNVEANMTKQESKIGLKTKANVESNVEHVSRVTVALSSSSVKDAVVEPEICPQAVVKYYLSATENCASDKKKWRLKAKKHLLAEGWVLKYRNKNKTRAVYKSPQNQCLKKLKDACRVYLEATIPRWTIAGMRTLNVSSINVEGVDSDNIMKCVTKIFQKDPEFNVRDTLLATASRSNRNTSRHRHMEMSDPNNFHQKPQNVISWLVEKNKVVPRSKVYYQGNRGRDPAVAEGRITRDGIKCSCCHNIYGINGFASHASGSSDLSPSGNIFLKDGRSLLDCQREVMYDDRTSETTEKPSNDFDKDKNDDICSICRYGGDIILCDKCPSAFHKECIGLKDIPDGHWFCPLCHCTICRKIATKSTEDGRFLTCTQCQLKYHVGCLTNRGADQHLEQWFCGINCERMYVGLRELLGKAISVGEKNLSWTLLKFENTHSSDIGNTTNEFLIECYSKLSVAALAMHECFVPQQNPLSRRDITVDIKFSRWSNLPRLNFHGFYTVLLERNEELVSVANIRVYGEKVAEVPLVGTRPQFRRLGMCRILMTVLEKVLINLGVKRLVLPAIPDTLETWTKYFDFVRMTSSDRKQFLEHVFLEFPETILCHKVLTRKSTSQDSDLMYQY 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0042 879 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 561 612 IPR013083 -
Lal10g0042 879 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 613 664 IPR013083 -
Lal10g0042 879 SUPERFAMILY FYVE/PHD zinc finger 556 611 IPR011011 -
Lal10g0042 879 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 4 263 - -
Lal10g0042 879 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 300 869 - -
Lal10g0042 879 CDD NAT_SF 759 819 - -
Lal10g0042 879 Pfam Tify domain binding domain 493 544 IPR032308 -
Lal10g0042 879 PANTHER PHD ZINC FINGER PROTEIN 4 263 - -
Lal10g0042 879 PANTHER PHD ZINC FINGER PROTEIN 300 869 - -
Lal10g0042 879 SMART agenet_At_2 106 163 IPR014002 -
Lal10g0042 879 Gene3D - 734 830 - -
Lal10g0042 879 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 754 824 IPR016181 -
Lal10g0042 879 ProSiteProfiles Zinc finger PHD-type profile. 568 613 IPR019787 -
Lal10g0042 879 Pfam PHD-finger 570 612 IPR019787 -
Lal10g0042 879 SUPERFAMILY FYVE/PHD zinc finger 612 667 IPR011011 -
Lal10g0042 879 Pfam Agenet domain 23 99 IPR008395 -
Lal10g0042 879 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 705 857 IPR000182 GO:0016407
Lal10g0042 879 SMART PHD_3 612 662 IPR001965 -
Lal10g0042 879 SMART PHD_3 570 611 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0042 Lal-Chr10 511731 516745 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g0042 442 809 PHD Transcription Factor Family AT5G58610 44.828 2.89e-100 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lal10g0042 Agenet 3.2e-08 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g0042 - - lang:109342495 1488.01