Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0039 ATGGAGCGGTCAGGGCTGGGGAGCTTGAATGGCATTCATCATATTGTTGAAGTAGCTGGGAGCACCGACACTTCCACTACTGCCTCGCACGATAGACATATTAACGACATTGAAATACCACAGCAAGAAGACAGACATAATAGTGCAAGATTAACAGTTTCTCAGCCACCGGTTTTAACATCTAGTTCATCTAGCAGGTCAAATACTAGGAACTCTTTGTCAAGACGAGGGAATACCCGTCGGCGTACGAGCCCGGTTCATTCTGCATTATGGATATCTGTTGAGTTTGTCCTCTTAGCTATCCAGATTATTGCATCTATTGTTGTTTTGTCTTTGTCAAGGCATGAGCATCCACGTACCCCATTGTTTGAATGGATCGTGGGCTATGCAATTGGATGCGCTGCTACTCTCCCTATGCTTCATTGGCGGTATTATCATCATAACCATATTCAGGAGCAAGATTCATTTCAATCACACCAAACATCTCCTCGGATTAATGATCCTTCAGGCACACTTTCCAGATCTAATGAAGATGATCAGGCTGCTATTGTATCATCCAGAAGCTATCAAGCTTCAGCGTTGGCAAATAGAAGAATGAAGACACTAATGGAATACTTTAAAATATCCTTAGATTGCTTTTTTGCTGTATGGTTTGTTGTCGGAAATGTATGGATCTTTGGTGGACATTCGTCTGCAGATGATGCTCCTAACCTGTACAGGTTATGTATAGTGTTTCTTGTCTTTAGCTGTATTGGTTATGCTATGCCCTTCATTCTCTGTTCAACAATATGCTGTTGTCTCCCTTGTATAATTTCCATCCTTGGGGTTAGAGAGGATTTGACACAGAACAGAGGAGCAACTTCTGAATCCATCGATGCTCTGCCAACTTTCAAGTTCAAGATGAAGAAAAATAAAAGAAGTGGTGAAAGCCACTCTGCTGCTGCTGAAGGTGGAATCGTGGCCGCAGGAACTGAAAAGGAGCGTGTGATCACTGGAGAAGATGCTGTTTGCTGCATCTGCCTGGCGAAGTATGAGAATAATGATGAACTAAGAGAATTGCCTTGTTCCCATATTTTCCACAAAGAGTGTGTAGACAAGTGGTTGAAGATAAATGCATTATGCCCTCTTTGCAAGAGTGAGGTTGGTGAGAATTTAACAAGACCGAACTCTGAGGAAGATGCCAGCCAACAACGGTTTGAGATCAGGGTTGAGAATGATGTTGCCAACACTGCTGTTTAA 1239 0.427 MERSGLGSLNGIHHIVEVAGSTDTSTTASHDRHINDIEIPQQEDRHNSARLTVSQPPVLTSSSSSRSNTRNSLSRRGNTRRRTSPVHSALWISVEFVLLAIQIIASIVVLSLSRHEHPRTPLFEWIVGYAIGCAATLPMLHWRYYHHNHIQEQDSFQSHQTSPRINDPSGTLSRSNEDDQAAIVSSRSYQASALANRRMKTLMEYFKISLDCFFAVWFVVGNVWIFGGHSSADDAPNLYRLCIVFLVFSCIGYAMPFILCSTICCCLPCIISILGVREDLTQNRGATSESIDALPTFKFKMKKNKRSGESHSAAAEGGIVAAGTEKERVITGEDAVCCICLAKYENNDELRELPCSHIFHKECVDKWLKINALCPLCKSEVGENLTRPNSEEDASQQRFEIRVENDVANTAV 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0039 412 MobiDBLite consensus disorder prediction 38 80 - -
Lal10g0039 412 SUPERFAMILY RING/U-box 328 384 - -
Lal10g0039 412 ProSiteProfiles Zinc finger RING-type profile. 337 378 IPR001841 -
Lal10g0039 412 MobiDBLite consensus disorder prediction 156 177 - -
Lal10g0039 412 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 1 401 - -
Lal10g0039 412 MobiDBLite consensus disorder prediction 46 74 - -
Lal10g0039 412 Pfam Ring finger domain 337 378 IPR001841 -
Lal10g0039 412 SMART ring_2 337 377 IPR001841 -
Lal10g0039 412 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 320 384 IPR013083 -
Lal10g0039 412 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 401 - -
Lal10g0039 412 CDD RING-H2_RNF111_like 336 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0039 Lal-Chr10 448424 455864 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g0039 56 384 C3H Transcription Factor Family AT1G80400 53.274 6.89e-132 383
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g0039 - - gmx:100778728 613.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0835 8 6052809 6057885 Lal10g0039 10 448424 455864 LSH
Lal8g1549 8 19822941 19827043 Lal10g0039 10 448424 455864 LSH
Lal25g1077 25 14095970 14103779 Lal10g0039 10 448424 455864 LSH
Lal10g0039 10 448424 455864 Lal4g0168 4 1052615 1057016 PCT
Lal4g0168 4 1052615 1057016 Lal10g0039 10 448424 455864 PCT