Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0031 ATGAGTAGCCTGGTTGAGAGGCTTCGTGTAAGATCAGACCGCAAGCCAATCTATAATATAGACGAGTCAGATGATGATGCTGATTTTTTGCCTAGAAAGCAGGGGACAACTCAGGAAAAGTCTGATAGGATAGTCAGAAGTGATGCAAAAGAGGATTCATGTCAAGCTTGTGGAGAAAGTGGAGCTCTTGTGAGTTGTGAAACATGCACTTATACTTTCCATTCTAGTTGTTTACTCCAACCGCTTAAAAGCCCCCTTTCGGACCACTGGAAGTGCCCTGAATGCGTTAGCCCACTTAATGATATTGATAAGATATTAGATTGTGAGACGTGTTCTACTGTAGCTGGCGAAAGTGATGCCAGTAAATCAGGGACAAACCAAAAGTATCTTGTTAAGTGGAAGGGACTATCATACTTGCACTGCAAATGGGTGCCAGAAGAAGAGTTTCTGAAAGGTTTCAAGAATTATCCTCGTCTAAGGACCAAAATAAACAACTTTCATCGTCAAATGGCATCAGTGAATTCTTCTGATGAAGATTTTGTTGCCATTCGACCTGAATGGACTACGGTTGATCGAATACTTGCTTGCAGGGATAACGAGGAGAAGGAGTATCTTGTGAAGTGGAAAGAGCTTGCATATGATGAATGCCATTGGGAGCTTGAGTCAGATATCTCCGCATTTCAGCCAGAAATAGATAGATTCAATAGATTTCAGTCTAGGTCAAGGAAAAAGCCTTCTAGTAAGCAAAAAGGCAGTGATAATGATGGTGCTGAGTTGAATCAGCAGAAAGAATTTCAACAGTGTGAGCATAGTCCTGAATTTCTTTCAGGGGGTTCATTACATCCATATCAACTTGAAGGGTTGAACTTCTTACGATTCTCTTGGTCCAAGCAAACTCATGTTATACTTGCTGATGAAATGGGACTTGGAAAAACCATACAAAGCATTGCTTTCTTAGCTTCCCTTCTTGAAGAAAACATTACTCCACATCTAGTGGTTGCTCCACTTTCAACTTTGCGAAACTGGGAGCGTGAATTTGCTAATTGGGCACCTCAAATGAATGTTGTTATGTATTTCGGATCTGCTCAAGCTCGTTCTGTTATAAGGGAGTATGAATTTTACTTTCCAAAGAAGCAGGAGAATATCAAGAAAAAGAAATGTGTTAATAAAAACAAGCAAGACATGGTTAAGTTTGATGTCCTTTTGACATCCTATGAGATGATTAACCTTGATACAGCAACATTGAAATCTATAAAGTGGCAGTGCATGATCGTGGATGAAGGTCATCGTCTCAAAAACAAGGATTCCAAACTGTTTTCTTCATTGAAGCAATATTCTACGAGACATCGTGTGCTTCTGACAGGAACTCCTCTTCAGAACAATCTGGATGAACTTTTTATGCTCATGCACTTCCTTGATGCTGGCAAGTTTGGAAGTTTAGAGGAGTTCCAGGAAGAGTTTAGAGATATCAATCAAGAGGAACAGGTCTTGAGGCTTCATAAAATGTTGGCTCCACATCTCCTGCGAAGAGTGAAGAAAGATGTCATGACAGAACTACCTCCTAAAAAGGAACTTATTTTACGTGTTGAATTAAGCAGCAAACAAAAAGAATATTATAAGGCAATTTTGACCCGTAATTATGAGATATTAACTCGCCGTGGTGGTGCACAAATTTCTCTTATTAATGTTGTTATGGAACTGCGTAAGCTCTGCTGTCATCCCTACATGTTTGAAGGAGCTCAGCCACTTCTTGATGATGCAAAAGAAGCATTCATGCACCTTCTAGAATCATCAGGGAAATTGCAATTGTTGGACAAGATGATGGTGAAGCTTAAAGAGCAAGGACATAGAGTCCTGATATATTCCCAATTTCAGAACATGCTTGACTTGCTTGAAGATTACTGTTCTTATAAGACTTGGCATTATGAAAGGATAGATGGCAAGGTTGGTGGAGCTGAAAGACAAATAAGGATAGATAGATTTAATGCAAAAAATTCTACAAGATTTTGTTTTCTTCTTTCTACTAGAGCTGGGGGCATTGGGATAAACCTTGCAACAGCTGACACAGTTATTATATATGACAGTGATTGGAATCCACATGCTGATCTACAAGCTATGGCTAGAGCTCATCGACTCGGACAAACTAACAAGGTGATGATTTTTAGGCTTATAACGCGAGGCACAATTGAAGAAAGGATGATGCAGTTGACAAAGAAGAAAATGGTGTTAGAACACCTAGTAGTAGGGAGGCTAAAGGCTCAAAATATTAACCAGGAAGAGTTGAACGATATTATAAGCTATGGTTCGAAGGAGTTATTTGCGGATGAGAATGATGAAGCAGGAAAATCTCGCCAAATTCATTATGATGATGCTGCCATAGACAGGCTGCTGGATCGTGATCAAGTTGGAGAAGAAGAGTCCAATTTGGATAATGAAGATGAAAATGGATTTCTGAAGGCCTTTAAGGTGGCAAATTTTGAATACATTGATGAAGTTGAGGCTGCAAAAGAGGAGGAGGCTCGAAAAAGAGAAATGGAGAGTGAATCTTCATTGAACAGCTCAGCAAGATCAAACTACTGGGAAGAGTTGTTAGGAGACAGATATCAAGAGCATAAAGTTGATGAGCTTAATTCATTGGGCAAAGGGAAGCGAAGCCGCAACAAGTTGCTGGGGGATGATTTTGCTGGTCCTGAAGATTTAAACTCTGATGTTGAAGATGACAATTATGAAGCGGATCCAGATCTTACTGATGATTCTTCAAATTCAAATGGAACTGTTTCTACTAGAAGGTCTCACAAGAGGAAAGTTCATGCAATTAGCACAGAGCCGCTTCCTTTAATGGAAGGTGAAGGAAGATCACTCAAAATACTCGGTTTTAATCAACATCAGAGGGCTACTTTTGTTCAAATTTTGATGAGGTTTGGGGTCGGTGATTATGATTGGAAAGATTTTGTTCCTCGCATCAAACAGAAGAGTGTTGAAGAAATCAGAGAGTATGGAATGCTTTTCTTGTCCCATATTGCTGAACAGATAACTGATTCCCCAACTTTCTCAGATGGTGTTCCAAAAGAAGGACTTCGGATACGTGATTTACTTGTTAGGATTGCCATTCTGATTATGATAGGGGACAAAGTGAAGTTTGCCTTAGAAAATCCTGGAACTCAACTTTTTTCAGATGCCATCTTAGCACGCAATGCAGGTTTGAAGTGTGTAAAGGCATGGAAGGAGGAACATGATGTTGTGTTACTGCAGGGTATATTGAAGCACGGGTATGGAAGGTGGCAAGCTATTGTTGATGATAAGGTTCTGAAGCTTCAGGAAGTTATCTGTCAGGAGTTGAATATTCCCCTTCTAAATGCACCAGTTCCTGGACAAGTTGGTGCTCAAGTGCAAACTAATGCTCAGAGTGACATAGCTGCTGATGGTGCACAAGGTGGTTCTGGTGATGCTAGGAACCAAACACAGTTAGTGTTGTATCATTATAGAGACATGCAGAGAAAACAGATTGACTTTGTAAAAAGGAGGGTTCAACTCTTGGAACAAGGTCTCAATGCTGAGGCCGAGATTGCTTACTATAGTGATCCAAATGCAAAAATTCCAGTTGATGAATATATAATTGAACCATCTATGACTAGGAATGTACCTAGTTATATATCAGGGGAGAGTACTGTCACCAACCTGATTGACCAACTGCCTCAAGTAGAAGCAATAGCTTCTCAAGAATTACCTGTTGCTGCTGCTGATTATGGTCCAAATCGGTTCGAACTAGTCAACAATATTCTCTCTCCAACTCAACAGTGA 3801 0.4004 MSSLVERLRVRSDRKPIYNIDESDDDADFLPRKQGTTQEKSDRIVRSDAKEDSCQACGESGALVSCETCTYTFHSSCLLQPLKSPLSDHWKCPECVSPLNDIDKILDCETCSTVAGESDASKSGTNQKYLVKWKGLSYLHCKWVPEEEFLKGFKNYPRLRTKINNFHRQMASVNSSDEDFVAIRPEWTTVDRILACRDNEEKEYLVKWKELAYDECHWELESDISAFQPEIDRFNRFQSRSRKKPSSKQKGSDNDGAELNQQKEFQQCEHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLLEENITPHLVVAPLSTLRNWEREFANWAPQMNVVMYFGSAQARSVIREYEFYFPKKQENIKKKKCVNKNKQDMVKFDVLLTSYEMINLDTATLKSIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFRDINQEEQVLRLHKMLAPHLLRRVKKDVMTELPPKKELILRVELSSKQKEYYKAILTRNYEILTRRGGAQISLINVVMELRKLCCHPYMFEGAQPLLDDAKEAFMHLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQNMLDLLEDYCSYKTWHYERIDGKVGGAERQIRIDRFNAKNSTRFCFLLSTRAGGIGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGTIEERMMQLTKKKMVLEHLVVGRLKAQNINQEELNDIISYGSKELFADENDEAGKSRQIHYDDAAIDRLLDRDQVGEEESNLDNEDENGFLKAFKVANFEYIDEVEAAKEEEARKREMESESSLNSSARSNYWEELLGDRYQEHKVDELNSLGKGKRSRNKLLGDDFAGPEDLNSDVEDDNYEADPDLTDDSSNSNGTVSTRRSHKRKVHAISTEPLPLMEGEGRSLKILGFNQHQRATFVQILMRFGVGDYDWKDFVPRIKQKSVEEIREYGMLFLSHIAEQITDSPTFSDGVPKEGLRIRDLLVRIAILIMIGDKVKFALENPGTQLFSDAILARNAGLKCVKAWKEEHDVVLLQGILKHGYGRWQAIVDDKVLKLQEVICQELNIPLLNAPVPGQVGAQVQTNAQSDIAADGAQGGSGDARNQTQLVLYHYRDMQRKQIDFVKRRVQLLEQGLNAEAEIAYYSDPNAKIPVDEYIIEPSMTRNVPSYISGESTVTNLIDQLPQVEAIASQELPVAAADYGPNRFELVNNILSPTQQ 1266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0031 1266 PANTHER CHD3-TYPE CHROMATIN-REMODELING FACTOR PICKLE 5 1047 - -
Lal10g0031 1266 Pfam Helicase conserved C-terminal domain 600 713 IPR001650 -
Lal10g0031 1266 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 292 475 IPR014001 -
Lal10g0031 1266 CDD CD1_tandem 98 168 - -
Lal10g0031 1266 SMART chromo_7 99 161 IPR000953 -
Lal10g0031 1266 SMART chromo_7 186 239 IPR000953 -
Lal10g0031 1266 Coils Coil 828 848 - -
Lal10g0031 1266 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 45 97 IPR013083 -
Lal10g0031 1266 ProSiteProfiles Chromo and chromo shadow domain profile. 188 249 IPR000953 -
Lal10g0031 1266 SMART PHD_3 53 96 IPR001965 -
Lal10g0031 1266 Gene3D - 99 171 - -
Lal10g0031 1266 SMART DUF1087_2 834 899 IPR009463 -
Lal10g0031 1266 ProSiteProfiles Chromo and chromo shadow domain profile. 100 178 IPR000953 -
Lal10g0031 1266 Pfam CHD subfamily II, SANT-like domain 927 1059 IPR009462 GO:0003677|GO:0006338
Lal10g0031 1266 MobiDBLite consensus disorder prediction 898 914 - -
Lal10g0031 1266 CDD SF2_C_SNF 598 724 - -
Lal10g0031 1266 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 270 510 IPR027417 -
Lal10g0031 1266 SMART ultradead3 276 486 IPR014001 -
Lal10g0031 1266 Gene3D - 520 744 IPR027417 -
Lal10g0031 1266 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 5 1047 - -
Lal10g0031 1266 SMART helicmild6 629 713 IPR001650 -
Lal10g0031 1266 SUPERFAMILY Chromo domain-like 66 172 IPR016197 -
Lal10g0031 1266 Gene3D - 1029 1188 - -
Lal10g0031 1266 MobiDBLite consensus disorder prediction 19 44 - -
Lal10g0031 1266 MobiDBLite consensus disorder prediction 887 937 - -
Lal10g0031 1266 Gene3D - 272 519 IPR038718 -
Lal10g0031 1266 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 512 767 IPR027417 -
Lal10g0031 1266 Gene3D - 177 236 - -
Lal10g0031 1266 CDD CD2_tandem 186 236 - -
Lal10g0031 1266 Pfam Chromo (CHRromatin Organisation MOdifier) domain 189 236 IPR023780 -
Lal10g0031 1266 Pfam Chromo (CHRromatin Organisation MOdifier) domain 116 155 IPR023780 -
Lal10g0031 1266 SMART DUF1086_2 909 1062 IPR009462 GO:0003677|GO:0006338
Lal10g0031 1266 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 603 764 IPR001650 -
Lal10g0031 1266 Pfam CHD subfamily II, DUF1087 835 888 IPR009463 -
Lal10g0031 1266 Pfam SNF2-related domain 300 577 IPR000330 GO:0005524|GO:0140658
Lal10g0031 1266 ProSiteProfiles Zinc finger PHD-type profile. 51 98 IPR019787 -
Lal10g0031 1266 SUPERFAMILY Chromo domain-like 175 237 IPR016197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0031 Lal-Chr10 324426 351865 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g0031 302 740 RAD5 or RAD16-like Gene Family AT1G02670 24.277 2.80e-32 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lal10g0031 SNF2_N 1.2e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g0031 K11643 - gmx:100790230 1901.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g1037 25 13728580 13746746 Lal10g0031 10 324426 351865 LSH
Lal10g0031 10 324426 351865 Lal17g0208 17 1264026 1286029 PCT
Lal10g0031 10 324426 351865 Lal21g0312 21 2070464 2089699 PCT
Lal17g0208 17 1264026 1286029 Lal10g0031 10 324426 351865 PCT
Lal21g0312 21 2070464 2089699 Lal10g0031 10 324426 351865 PCT