Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0030 ATGGAAAAAGATAACATACTCTTAGCTCCAACTACACCATTGCCAAAATCACAAGTAGAGAAGAAACATGAATCTGTTGAAGAAGAAGAAGAAGAAAATGAGTCAAAGGTACTAGTCACTTCACTGGATCTGAATAATAATGTCTGTTACAATGATTATTCTACTCTTTGTTTCACTCCACAAGGTCAAGAACTCAATCTCATCACTTGTTTGGATAATATTATTGATTCTACATCACAGCACAACCCTATTGGTTGTGATGAAAAACAAAGAGTGTTCTCTTGTAACTATTGCCACAGAAAGTTCTATAGTTCACAAGCACTAGGAGGGCACCAAAATGCTCATAAAAGAGAGAGGTCAATAGCAAAAAGAGGAACACAAATAATGGCCTCAGAAGAAGCCTTTGGAATTCCTCTTTTACATAATAACTTATTTCACTATGGAAGCATGGGTTATCATAATAATAATAATACTATTGGGGTTCAAGCACATTCAATGATTCATAAGCCTTTTCATATTTCTTCTAATGGATTTGGAAACCCTTTTGGAAATTATAATGGTTGGTCAAGATTTTCAAAGCAAGCTATGCATAGAACAACAACAACAAGACCTACTGCATTATTATTATCTTCAAGAAGCAGTGTTGGTAGATTTGAAGTGGTAAATACTATGATGGTGAGTAATAATAGAACTCATTTGAAGACTAGTAATAATAATCAAGAAGAAATATTGAACCATCTTGATTTATCTCTCAAGTTGTGA 762 0.3346 MEKDNILLAPTTPLPKSQVEKKHESVEEEEEENESKVLVTSLDLNNNVCYNDYSTLCFTPQGQELNLITCLDNIIDSTSQHNPIGCDEKQRVFSCNYCHRKFYSSQALGGHQNAHKRERSIAKRGTQIMASEEAFGIPLLHNNLFHYGSMGYHNNNNTIGVQAHSMIHKPFHISSNGFGNPFGNYNGWSRFSKQAMHRTTTTRPTALLLSSRSSVGRFEVVNTMMVSNNRTHLKTSNNNQEEILNHLDLSLKL 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0030 253 SUPERFAMILY beta-beta-alpha zinc fingers 90 120 IPR036236 -
Lal10g0030 253 ProSitePatterns Zinc finger C2H2 type domain signature. 95 115 IPR013087 -
Lal10g0030 253 Gene3D Classic Zinc Finger 74 135 - -
Lal10g0030 253 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 7 253 IPR044246 GO:0009788
Lal10g0030 253 Coils Coil 16 36 - -
Lal10g0030 253 ProSiteProfiles Zinc finger C2H2 type domain profile. 93 120 IPR013087 -
Lal10g0030 253 MobiDBLite consensus disorder prediction 1 34 - -
Lal10g0030 253 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 7 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0030 Lal-Chr10 312041 312802 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g0030 28 253 C2H2 Transcription Factor Family AT5G10970 38.306 7.23e-36 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal10g0030 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g0030 - - lang:109344436 270.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g0030 10 312041 312802 Lal17g0211 17 1296620 1297453 PCT
Lal10g0030 10 312041 312802 Lal21g0314 21 2106016 2106873 PCT
Lal10g0030 10 312041 312802 Lal4g0200 4 1251035 1251829 PCT
Lal17g0211 17 1296620 1297453 Lal10g0030 10 312041 312802 PCT
Lal21g0314 21 2106016 2106873 Lal10g0030 10 312041 312802 PCT
Lal4g0200 4 1251035 1251829 Lal10g0030 10 312041 312802 PCT