Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0014 ATGACAAGCAAGAGAAAGAAGATGAAGATGTTTACATGTGGTGATAATGACTATAATAAGGCAACATCAGAAGAGGTTGAGAGAGAACAAATGTCAACAGAAAATGTTAGCCAATATAGCCTCACTGCCATTGTACTTCCATCTCTTGGTGCCACCGCTGTCCATGCCGGCGGCAGACACAAACTCCGCCGTTACATTATCTCCCCATATAACCCTCGCTACAAACTATGGGAGAGTTTTCTGGTGTTATTAGTTTTCTACACTGCATGGGTGTGTCCATTTGAATTTGGACTCCTTCAGAAAACATCAAGGGGTATACTTGCTATAACAGACAATGTTGTGAATGCTTTTTTTGCCATTGATATTGTTCTTACCTTCTTTATTGCCTACTTGGATAAAGCTTCTTATGTTCTCATTGACAATCGAAAGCTCATTGCTTTAAGATATGCTAAAACTTGGTTGCTCTTTGATATCATCTCTACTATCCCTTCTGAACTTGTTAGAAGTTTGGGTCCAAGTTTTCTCCACACATATGGCTACTTCAATATTCTTCGCCTATGGCGTCTTCGTAGAGTCAGTGCCATGTTTGCAAGATTAGAAAAGGACAGGAATTACAACTACTTTTGGGTCCGATGTTCAAAGCTTATATGTGTTACTCTATTTTCAGTGCATGCTGCTGGGTGTTTTTTCTATTTTATTGGGTCACAGGGTGACTCAAAACTTACATGGCTTGGGCTTGTTGGTGAGGACTATGACAAGAGTTTGTGGGGCCAATATGTAATTTCAATATATTGGTCGATAGTGACTCTTTCAACAGTTGGTTATGGTGATTTACATCCTGTAAATACAAAAGAAATGACATTTACCATTATCTTTATGCTCTTCAATTTTGGACTTACTGCATATATAATAGGAAACATGACCAACTTGGTTGTTCACTGGACAAATAAAACTAAGAGATATAGAGAAAGTATCCAATCTGCCTCAAATTTCGCCCAAAGGAATCAATTACCAATCAGATTGCAAGAACAAATATATGCTCATTTGCTTATGAAGTACAGAACTGATTTAGAAGGATTGCAACAACAAGAAATCATTGATTCACTTCCAAAAGCAATCAAATGTAGTATCTCTTACTATTTATTCTATTCACTTGTTGAAAAAGTCTACTTATTTCATGGAGTCTCACATGACCTTATCTTTCAACTGGTGACTGAGATGAAGGCTGAGTATTTTCCTCCAAAGGAAGATATAATTTTGCAGAATGAAGCACCAACAGACTTTTATATATTGGTTACTGGAGTTGTTGTTGTTAGTGAGGCCAAGACAGGAGATGTAGTTGGAGAAATAGGAGTACTGTGTTACAGGCCACAACTGTTTACAGTTCGGACCAAGAGACTCACTCAACTTCTGCGTTTGAATCGAACTACATTTATATCTTTGTCTCATTCAAATGTTGGAGATGGGACAATAATCATGAATAATTTTCTTCAGCATTTGCATGAAACAAAGGATCCATTGATGCAAGGAGTTGTGGAAGAAACAGAGGCAATGTTGGCTCGGGGCAGAATGGATTTGCCAGTGAGTTTATTGTTTGCATCAAATAGAGGAGATGATATATTGTTGCAAAGGCTTCTAAAGAAGGGTTCGGATCCAAATGAAGCAGACAAGAATGGAAGAACAGCACTGCATATTGCAGCTTCTAAGGGTAGTAAGCATTGTGTGATTCTGCTTCTAGAATATGGAGCTGATCCTAACACAAAAGATTTTGAAGGAAGTGTCCCACTTTGGGAAGCAATGATGGGCAAACATGAATCTGTCATGAAATTTCTTGCAGACAATGGTGCAGACATATCTTTAGCCAATGTAGGCCATTTTGCATGCATTGCTGTTGAGCAAAATAACTTAGACTTGCTCAAGAATATTGTTAAATACGGCGGTGACGTGACGCAATCCAAAAGCAATGGATCCACTGCACTCCATGCTGCAGTTTGTGAAGGCAATGTTGAAATAGTGAAGTTCCTTATAGAAGAAGGAGCAGAGATTGATAAGCAAGATGCTAATGGTTGGACTCCAAGGGCTTTTGCAGATCATCAATGCCATGAAGAAATACAAATTCTATTCCAAAACACTAAAGGATGTAAGAAAAAACCATCTGATATTCCTCCAACACCAAAGAATGATGGAGGAACCTTTTATAATAGGTGGAAAAGTGACTTATCAATGCCTACAATTTCCCAAGGAAGCATGCCGTTACCTAATCAAGATTTAACATGGTCAGAAATGCATGGCAAGCGAAGCGCTAACGCTTTTCATAATTCCTTTTTTGGGATCATGTCAGCTGCAAATCGCGGTAAAAAAAATCATGATGCATCTCAAAGCAATCACAATGCTACAATGAATATGAATGAATTACCATCCAGAGTAACACTTAGTTGTCCAGACAAAGGTGAAAATGCTAAAAAGCTTGTTTTTCTGCCAAAGTCTCTTCAAGAACTGCTAGATATTGGTGCCAAAAAGTTTGATGTCTCTCCCACCAAAATCTTAAATAAAGAAGGAGCTGAAATTGAAGATATAAACTTGATAAGAGATGGAGATCATCTTATTCTTGCATTGGACTGA 2622 0.3806 MTSKRKKMKMFTCGDNDYNKATSEEVEREQMSTENVSQYSLTAIVLPSLGATAVHAGGRHKLRRYIISPYNPRYKLWESFLVLLVFYTAWVCPFEFGLLQKTSRGILAITDNVVNAFFAIDIVLTFFIAYLDKASYVLIDNRKLIALRYAKTWLLFDIISTIPSELVRSLGPSFLHTYGYFNILRLWRLRRVSAMFARLEKDRNYNYFWVRCSKLICVTLFSVHAAGCFFYFIGSQGDSKLTWLGLVGEDYDKSLWGQYVISIYWSIVTLSTVGYGDLHPVNTKEMTFTIIFMLFNFGLTAYIIGNMTNLVVHWTNKTKRYRESIQSASNFAQRNQLPIRLQEQIYAHLLMKYRTDLEGLQQQEIIDSLPKAIKCSISYYLFYSLVEKVYLFHGVSHDLIFQLVTEMKAEYFPPKEDIILQNEAPTDFYILVTGVVVVSEAKTGDVVGEIGVLCYRPQLFTVRTKRLTQLLRLNRTTFISLSHSNVGDGTIIMNNFLQHLHETKDPLMQGVVEETEAMLARGRMDLPVSLLFASNRGDDILLQRLLKKGSDPNEADKNGRTALHIAASKGSKHCVILLLEYGADPNTKDFEGSVPLWEAMMGKHESVMKFLADNGADISLANVGHFACIAVEQNNLDLLKNIVKYGGDVTQSKSNGSTALHAAVCEGNVEIVKFLIEEGAEIDKQDANGWTPRAFADHQCHEEIQILFQNTKGCKKKPSDIPPTPKNDGGTFYNRWKSDLSMPTISQGSMPLPNQDLTWSEMHGKRSANAFHNSFFGIMSAANRGKKNHDASQSNHNATMNMNELPSRVTLSCPDKGENAKKLVFLPKSLQELLDIGAKKFDVSPTKILNKEGAEIEDINLIRDGDHLILALD 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0014 873 CDD CAP_ED 391 485 IPR000595 -
Lal10g0014 873 ProSiteProfiles Ankyrin repeat profile. 558 590 IPR002110 GO:0005515
Lal10g0014 873 SMART cnmp_10 391 497 IPR000595 -
Lal10g0014 873 ProSiteProfiles Ankyrin repeat profile. 591 623 IPR002110 GO:0005515
Lal10g0014 873 SMART ANK_2a 591 620 IPR002110 GO:0005515
Lal10g0014 873 SMART ANK_2a 558 587 IPR002110 GO:0005515
Lal10g0014 873 SMART ANK_2a 622 651 IPR002110 GO:0005515
Lal10g0014 873 SMART ANK_2a 525 554 IPR002110 GO:0005515
Lal10g0014 873 SMART ANK_2a 655 684 IPR002110 GO:0005515
Lal10g0014 873 PANTHER POTASSIUM CHANNEL AKT1 10 871 IPR045319 GO:0005249|GO:0006813
Lal10g0014 873 SUPERFAMILY cAMP-binding domain-like 316 500 IPR018490 -
Lal10g0014 873 PRINTS Ankyrin repeat signature 559 574 IPR002110 GO:0005515
Lal10g0014 873 PRINTS Ankyrin repeat signature 671 685 IPR002110 GO:0005515
Lal10g0014 873 Pfam KHA, dimerisation domain of potassium ion channel 808 870 IPR021789 -
Lal10g0014 873 ProSiteProfiles Ankyrin repeat region circular profile. 655 686 - -
Lal10g0014 873 Pfam Ion transport protein 75 318 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lal10g0014 873 SUPERFAMILY Ankyrin repeat 529 708 IPR036770 -
Lal10g0014 873 Gene3D Jelly Rolls 359 516 IPR014710 -
Lal10g0014 873 ProSiteProfiles Ankyrin repeat region circular profile. 558 589 - -
Lal10g0014 873 SUPERFAMILY Voltage-gated potassium channels 69 312 - -
Lal10g0014 873 ProSiteProfiles Ankyrin repeat profile. 655 687 IPR002110 GO:0005515
Lal10g0014 873 Gene3D - 75 312 - -
Lal10g0014 873 ProSiteProfiles KHA domain profile. 808 873 IPR021789 -
Lal10g0014 873 PANTHER INWARDLY RECTIFYING POTASSIUM CHANNEL SUBUNIT 10 871 - -
Lal10g0014 873 Pfam Ankyrin repeats (3 copies) 531 620 IPR002110 GO:0005515
Lal10g0014 873 Pfam Ankyrin repeats (3 copies) 629 714 IPR002110 GO:0005515
Lal10g0014 873 PRINTS EAG/ELK/ERG potassium channel family signature 87 94 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lal10g0014 873 PRINTS EAG/ELK/ERG potassium channel family signature 111 121 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lal10g0014 873 PRINTS EAG/ELK/ERG potassium channel family signature 122 131 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lal10g0014 873 PRINTS EAG/ELK/ERG potassium channel family signature 259 276 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lal10g0014 873 PRINTS EAG/ELK/ERG potassium channel family signature 285 296 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lal10g0014 873 PRINTS EAG/ELK/ERG potassium channel family signature 303 312 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lal10g0014 873 Gene3D - 527 710 IPR036770 -
Lal10g0014 873 Pfam Cyclic nucleotide-binding domain 411 483 IPR000595 -
Lal10g0014 873 ProSiteProfiles Ankyrin repeat region circular profile. 591 622 - -
Lal10g0014 873 ProSiteProfiles cAMP/cGMP binding motif profile. 391 481 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0014 Lal-Chr10 134256 144630 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g0014 20 873 Ion Channels AT2G25600 57.422 0.0 1017
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g0014 K21867 - gmx:100808832 1194.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g0014 10 134256 144630 Lal10g0014 10 134256 144630 ECH
Lal10g0014 10 134256 144630 Lal17g0245 17 1522029 1527993 PCT
Lal17g0245 17 1522029 1527993 Lal10g0014 10 134256 144630 PCT