Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g2342 ATGGGACGTGGAAAGATAGAGATAAAGAGGATCGAGAACAAAACCACAAGGCAAGTGACCTTCTCCAAAAGAAGATGTGGCCTCTTGAAGAAGACAAAGGAGCTTTCTGTGCTTTGTGATGCTAAGATCGGGATTATCATCTTCTCCAGCACCGGGAAGATGAGGGAATGGTGCACCGAACCCTTCAGGATGGAGCAGATCATAGAGCAGTACCAGATATCAAAAGGAACTTGCATAGCGGAACGTGGACGTGATCATCCCCGAGAAGAATTTGTCCATAACATGGCAATGCTGAGGCAGAAAACTATTCGTCTTGAATTGGAAATTCAACGCTATCTTGGAGAGGACACGAGGGGTTTGCAATACGAGGATTTGACTAAGCTTGAACAAGAATTGGAGAACTCTGTGGCAAGGGTTCGAAACCGTCATAATGAGCTCTTGCAACAACAAATGGAGAATCTGCGAAGGAAGGAAAGGATCTTGGAAGAGGAAAACAATAATTTGTCCAATTGGATTCAGGAACACCAAGCAGTGTTGGAGTTTCAGAAGGCCGCTGATACAGTGGAAGCAAGCAAACCAATGCATGTGATGGATCACTTCTCATTCTTTGAAGAGCAACCTGCTGGGAGCATCCTTCAACTAGCTTCTCCTATGCTTCCACACTTTTACCCATATCTTCAGCTGGCACAGCCCAATATCCAAGACTCAGTCAGGGACCAGAGCTATAACAATGAGCAATAG 741 0.4521 MGRGKIEIKRIENKTTRQVTFSKRRCGLLKKTKELSVLCDAKIGIIIFSSTGKMREWCTEPFRMEQIIEQYQISKGTCIAERGRDHPREEFVHNMAMLRQKTIRLELEIQRYLGEDTRGLQYEDLTKLEQELENSVARVRNRHNELLQQQMENLRRKERILEEENNNLSNWIQEHQAVLEFQKAADTVEASKPMHVMDHFSFFEEQPAGSILQLASPMLPHFYPYLQLAQPNIQDSVRDQSYNNEQ* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g2342 246 Pfam K-box region 87 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso9g2342 246 PANTHER PROTEIN TRANSPARENT TESTA 16-LIKE ISOFORM X1 1 234 - -
Gso9g2342 246 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 234 - -
Gso9g2342 246 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gso9g2342 246 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gso9g2342 246 Coils Coil 122 174 - -
Gso9g2342 246 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977|GO:0045944
Gso9g2342 246 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gso9g2342 246 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gso9g2342 246 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gso9g2342 246 SUPERFAMILY SRF-like 2 73 IPR036879 GO:0003677|GO:0046983
Gso9g2342 246 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso9g2342 246 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Gso9g2342 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g2342 Gso-Chr9 47761370 47765353 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g2342 1 241 MADS-box Gene Family AT5G23260 47.266 1.89e-68 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gso9g2342 K-box 1.9e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g2342 - - gmx:102667157 495.352