Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g2341 ATGACCGGTAAAAGTCCAATTACTCAACGGACAGCGAGACATGGCTCACACAAACTGTGCAAATTTGATTTATCGGATCTAGAATGGACAAATATGATTCCAGAGTGTCCAACATACCACCCATCAGAGCATGAGTTTGAGCATCCTTTAGTTTATCTGCAGAAGATTGCTCATGAGGCTTCTAAATATGGTATATGCAAAATTGTTTCTCCAATTGCAGCCTCTAACCCAGCTGCTTTTGTCTTAATGAAAGAGAAAAAAAATTTCAAGTTTGAAACAAATGTACAGCCTCTTCGTCTTTCTAAATGGAATGAAAAGGATATAATAACCTTTTCTATGAGAGGCAGAAAATATACATATCATGATTTTGAGGTTCTTGCAAACAAGGCCTTTTTTAGTAGATTTCACAGTTCTAGAGACCTTCCCTCTTCTTATGTGGAAAAGGAATTCTGGCATGAGATGGCTCAAGGAGAAAAAGGAACAGTTGAGTACGGAGTCAATGTCGAAGGTAGTGCCTTTTCATGTGATCCTAATGACAGGCTTGGAACAAGCAAATGGAATTTGAAGAATTTTTCACAGCTTCCACAATCCCTGATACGTTTAGTTGACAGGGAAATTCCCGGAATAACTGATCCTATGCTTTACATTGGGATGCTGTTCAGTATGTTTGCGTGGCATGTTGAAGATCATTATTTGTACAGCATAAATTATCATCACTCAGGTGCAAATAAAACTTGGTATGGCGTGCCTGGCTATGCAGCATCACAATTTGAAAAGACGGTCTTACAACATGTGTATTGCAATAAGATCATAACAAAACATGGAGAGGATGGAGCTTTCAAGTTTCTAGCACAAAAAACAACCATGTTCCCACCAAATGTCATGTTACAACATGATGTGGCAGTTTACAAGGCTGTACAAAAGCCAGGAGAGTTTATCATCACCTTTCCTAGAGCATATCATGCTGGATTTAGCCATGGTTTTAACTGTGGAGAAGCAGTAAACTTTGCAAATGGAGATTGGTTTCCACTTGGGGCTGCAGCTAGCAGGCGTTATACACATCTCAAAATGATGCCTTTAATTCCATATGAGGAACTTCTTTGTAAAGAGGCAATGTTGGTTTTCAAGTCCTCAAGAGTCAGAAGTTCCAAGAACAAACCTGAAGACACAACATCTTATCAAGCTATTATGCTGCCTTTCATGCATCTTATGCAATCTTATAAGACCTCCCTCTTGCGACTGAACAGTTCAAGAAAGTTGCATAGTTCTTCAAATACAACAGGTTCTCAGATATGCAGCCTTTGCTACAGGGATTGTTATGTAGCTTATTTGTTGTGCAAGTACTGCTTTTCTCATCCAATTTGTCTTTTCCACGACATTGCACCACAGACTTGTTTATGTGGGAGAGATTATACTATTTTCAAAAGGAATGACATTTTCGCACTGGAAGAAGCTGCAAAAAGTTTTCAACAGGGAAAAGAATGTGTTGACAAATTCTCTCTATCAAGTATATTCTCCTGTAACATAAATGATTGCATCAAAGTTCCTGAGAATAATCCTTGGCAGAGAGAAAAAAGTGTAAGAGGTACTAGTTTTCTAGGGGTTGCATCTAAACCGAAAACAAAAGTGGCTGACAGCACCAAGCACAGTGATGAAAGGAATAAGTCAACAACGAAGCATTGGAGAAACAATGGGCTTCCATCCGTGAGGGGTGCCGAAAGGCCAGGAATCATTTATAACTTGAGAAAACGCAAATCAAAATTGATTTAG 1770 0.3893 MTGKSPITQRTARHGSHKLCKFDLSDLEWTNMIPECPTYHPSEHEFEHPLVYLQKIAHEASKYGICKIVSPIAASNPAAFVLMKEKKNFKFETNVQPLRLSKWNEKDIITFSMRGRKYTYHDFEVLANKAFFSRFHSSRDLPSSYVEKEFWHEMAQGEKGTVEYGVNVEGSAFSCDPNDRLGTSKWNLKNFSQLPQSLIRLVDREIPGITDPMLYIGMLFSMFAWHVEDHYLYSINYHHSGANKTWYGVPGYAASQFEKTVLQHVYCNKIITKHGEDGAFKFLAQKTTMFPPNVMLQHDVAVYKAVQKPGEFIITFPRAYHAGFSHGFNCGEAVNFANGDWFPLGAAASRRYTHLKMMPLIPYEELLCKEAMLVFKSSRVRSSKNKPEDTTSYQAIMLPFMHLMQSYKTSLLRLNSSRKLHSSSNTTGSQICSLCYRDCYVAYLLCKYCFSHPICLFHDIAPQTCLCGRDYTIFKRNDIFALEEAAKSFQQGKECVDKFSLSSIFSCNINDCIKVPENNPWQREKSVRGTSFLGVASKPKTKVADSTKHSDERNKSTTKHWRNNGLPSVRGAERPGIIYNLRKRKSKLI* 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g2341 589 ProSiteProfiles JmjN domain profile. 36 77 IPR003349 -
Gso9g2341 589 PANTHER TRANSCRIPTION FACTOR JUMONJI FAMILY PROTEIN 2 589 - -
Gso9g2341 589 MobiDBLite consensus disorder prediction 542 559 - -
Gso9g2341 589 MobiDBLite consensus disorder prediction 539 569 - -
Gso9g2341 589 SMART cupin_9 183 353 IPR003347 -
Gso9g2341 589 Pfam JmjC domain, hydroxylase 213 336 IPR003347 -
Gso9g2341 589 PANTHER LYSINE-SPECIFIC DEMETHYLASE 2 589 - -
Gso9g2341 589 Gene3D Cupin 36 397 - -
Gso9g2341 589 ProSiteProfiles JmjC domain profile. 183 353 IPR003347 -
Gso9g2341 589 Pfam jmjN domain 37 69 IPR003349 -
Gso9g2341 589 SUPERFAMILY Clavaminate synthase-like 186 371 - -
Gso9g2341 589 SMART JmjN_1 35 76 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g2341 Gso-Chr9 47743890 47749437 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g2341 33 490 JUMONJI Transcription Factor Family AT2G34880 30.871 3.14e-61 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Gso9g2341 JmjC 2.8e-38 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g2341 - - gmx:100809650 1113.98