Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g2324 ATGGACAATAAATCAGATCCCAAAGCTGGTGCTACTGCTGTGCCACCTCCCCGAATTGGGAAGAGAGAGGGTGAGAATGAAGATGAGCAGCAAGTCAATGCAAAGAAGCATAAGAGACATGAGGTTGCAGAGGAGCAAAGGATTATGGATGAAATTGTTTCAGATGATTCCTTTGAAGATTTTGAACCAGATAAGAATCCTGAAGCTAAAAAAGACTCCCTCAGTAAACAGGAGAAGAAAGGCAAACCTGATAGTGCTAACTGTTCCAGTTCTTTGGAGTCATTGGCTGATGGTTCTGAGGAGGGTAAAGGTAATATGGATATTGATGAGGGTAATCATTCTGAAGAATGTAATGAAGAAACACTAGAGAAGATGCAAGTTTTGCCTGTAAAAAGTTCAGAGAACAGTGAGAAAGGAATTGAGGAAAAAGACCCTAAAGCTCCTCAAGAAAATCCTAAAATTCTAGCTACACCAAATGAACGAAATGCTGGATCGAAGACAATAGTTACTAGAAACTTGTCATACAGTGTGGAACGAGCTGATTTGGAAAATCTTTTCAAAGAGTGTGGAGAAATTGTTGATGTTCGTCTACATACGGATGCTGAAGGGAGGTTTAGAGGCTTTGGACATGTTGAGTTTGCAACAGCAGAAGCAGCACAAAACGCTCTTCAGTTAAATAATACAGAATTGTTAAGATGTCGAATCAGAGTTGTTATAGCTCCACAAAAGAATAAGCATAGAAGTTTCCATGTTATTTCTAGCAACTCGAGTCACTCATTTCAAAGGAGTGAAGGAACTCAGCCTGTGAAAGGTTCAGAGATTTCAGGGGACTGTGAACAAGAAACTGAGCCAAAACTAATTGCTACTTGCAAAGAACCAAGTGCTACATCAAAGGCAATATATGCTAAAAACTTGGCATACAGTATGGAGCAGGATGATATGGAATATCTTTTCAAAAATTGTGGAGAAATTGTTAGTATCCACCTACATACAGATCATAACGGGCGGTTTAAAGGCTATGGACATGTTGAGTTTGCAACCACAGAAGCTGCACAAAAAGCTCTTGAATTGAATAATACAGTATATCTGGGACGTCGTGTTGGAGTTTTTATAGCTAAAGGAAAGGGTGAATATACCTCCAATAGAAGCAACTGGAGCAAGTCATTCCACCAGAGTGAACAAACTAAGCCCATCAAAAGTACAGAGAGTTCAGAGTACTGTGAGGAAGAGGTTGAGGGAAAAGCCTCCAATAGTTCTTGGGAAAGTTCTAAAAGAGTAGCTACTTTGAAAGAACAAAATGCTCCATCAAAGACAATATATGTCAAAAACTTGTCATACAGAGTGGAACGGGCTGATATGGAAAATCTTTTCAAAGAATGTGGAAAAATTGTTGATGTTCATCTACATAGGAATCCTGATGGGAGGTTAAATGGCTTTGGACAAGTTGAGTTTGCAACAGCAGAAGCTGCAAAAAAAGCTCTTGAGTTGCATAATACAGAATTGTTGAGACGTCCCATTGGAGTTGATTTGGCTGAAGAAAAAGGTGAATATACCTACAGTAGAAGCAACTGGAGCAACTCATTCCAGAAGTGTGAAAGAGATCAGTCTCCAACTGTATTTGTGACGGGTTTTGATAGTTCCCTTCCGGCAGAAAAGATAAAAGCTAGCCTAGAAGAACATTTTGGTTCTTGTGGAGAGATTCAAAGGATATCAATTCCGACATTTCATGATTCTGGTGCTGTTAAGGGGTTTGCTCACTTGGGGTTCAAGGATGTTGTCAGTGTGAGGAAAGCTCTACATCTTGATCAAAATGAGTTAGGAGGTTTCCACTTGAGAGTCGAAAAAGCAAAGCCTCGACGTGAAAACCAGGGTATAGGTGGTGGTAGAGGTGGTGGTGGTGGTCATCAGTTTGGTGGAAGGGATGGAAGTGGCTATACCAGCAGAATGGGTTGGGGACGAAGTGGTGGTGGTGGGTGGCATTCTCTTCATTTTTCTGATGAAGGCACAGGGAGGAAGACCCACTCTTACTCATGA 2034 0.4086 MDNKSDPKAGATAVPPPRIGKREGENEDEQQVNAKKHKRHEVAEEQRIMDEIVSDDSFEDFEPDKNPEAKKDSLSKQEKKGKPDSANCSSSLESLADGSEEGKGNMDIDEGNHSEECNEETLEKMQVLPVKSSENSEKGIEEKDPKAPQENPKILATPNERNAGSKTIVTRNLSYSVERADLENLFKECGEIVDVRLHTDAEGRFRGFGHVEFATAEAAQNALQLNNTELLRCRIRVVIAPQKNKHRSFHVISSNSSHSFQRSEGTQPVKGSEISGDCEQETEPKLIATCKEPSATSKAIYAKNLAYSMEQDDMEYLFKNCGEIVSIHLHTDHNGRFKGYGHVEFATTEAAQKALELNNTVYLGRRVGVFIAKGKGEYTSNRSNWSKSFHQSEQTKPIKSTESSEYCEEEVEGKASNSSWESSKRVATLKEQNAPSKTIYVKNLSYRVERADMENLFKECGKIVDVHLHRNPDGRLNGFGQVEFATAEAAKKALELHNTELLRRPIGVDLAEEKGEYTYSRSNWSNSFQKCERDQSPTVFVTGFDSSLPAEKIKASLEEHFGSCGEIQRISIPTFHDSGAVKGFAHLGFKDVVSVRKALHLDQNELGGFHLRVEKAKPRRENQGIGGGRGGGGGHQFGGRDGSGYTSRMGWGRSGGGGWHSLHFSDEGTGRKTHSYS* 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g2324 677 MobiDBLite consensus disorder prediction 620 649 - -
Gso9g2324 677 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 548 611 IPR000504 GO:0003723
Gso9g2324 677 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 300 367 IPR000504 GO:0003723
Gso9g2324 677 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 171 236 IPR000504 GO:0003723
Gso9g2324 677 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 439 506 IPR000504 GO:0003723
Gso9g2324 677 MobiDBLite consensus disorder prediction 379 401 - -
Gso9g2324 677 CDD RRM1_NUCLs 438 514 IPR034349 -
Gso9g2324 677 SUPERFAMILY RNA-binding domain, RBD 158 259 IPR035979 GO:0003676
Gso9g2324 677 Gene3D - 521 658 IPR012677 -
Gso9g2324 677 SMART rrm1_1 299 370 IPR000504 GO:0003723
Gso9g2324 677 SMART rrm1_1 438 509 IPR000504 GO:0003723
Gso9g2324 677 SMART rrm1_1 167 238 IPR000504 GO:0003723
Gso9g2324 677 SMART rrm1_1 538 614 IPR000504 GO:0003723
Gso9g2324 677 MobiDBLite consensus disorder prediction 135 149 - -
Gso9g2324 677 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 537 618 IPR000504 GO:0003723
Gso9g2324 677 MobiDBLite consensus disorder prediction 1 159 - -
Gso9g2324 677 MobiDBLite consensus disorder prediction 379 422 - -
Gso9g2324 677 MobiDBLite consensus disorder prediction 20 83 - -
Gso9g2324 677 SUPERFAMILY RNA-binding domain, RBD 524 647 IPR035979 GO:0003676
Gso9g2324 677 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 541 676 - -
Gso9g2324 677 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 400 532 - -
Gso9g2324 677 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 58 384 - -
Gso9g2324 677 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 166 242 IPR000504 GO:0003723
Gso9g2324 677 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 298 374 IPR000504 GO:0003723
Gso9g2324 677 MobiDBLite consensus disorder prediction 253 278 - -
Gso9g2324 677 Gene3D - 95 250 IPR012677 -
Gso9g2324 677 Gene3D - 252 383 IPR012677 -
Gso9g2324 677 Gene3D - 384 520 IPR012677 -
Gso9g2324 677 MobiDBLite consensus disorder prediction 658 677 - -
Gso9g2324 677 MobiDBLite consensus disorder prediction 100 122 - -
Gso9g2324 677 CDD RRM2_NUCLs 538 616 IPR034350 -
Gso9g2324 677 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 541 676 - -
Gso9g2324 677 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 400 532 - -
Gso9g2324 677 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 58 384 - -
Gso9g2324 677 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 437 513 IPR000504 GO:0003723
Gso9g2324 677 MobiDBLite consensus disorder prediction 253 270 - -
Gso9g2324 677 SUPERFAMILY RNA-binding domain, RBD 293 383 IPR035979 GO:0003676
Gso9g2324 677 SUPERFAMILY RNA-binding domain, RBD 430 526 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g2324 Gso-Chr9 47547742 47576067 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g2324 158 514 Eukaryotic Initiation Factors Gene Family AT1G34140 24.302 9.18e-20 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g2324 - - gmx:102664796 1272.3