Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g2322 ATGAGTTGGCGGTCGGTGAGGGGAAGCCGTAAGAGGAAGATGGATTTCGAACTGGACCTCAACCGTGATCCGCCGCTGGTTCGAGAAGAGGAGGAGGAGGAGGAGGAGGGGGGGCCCTCAAGGCATCAGCAGCACCACCACCACCAACAAGAACCTCAAACTCCCATTGTCGATGTCGACGCCATTGACGACGATGTTGTTGAAAGCTCGCCTAGGTCTTTCGCTCAGGCTAAGAGCAATGCTGATGAGAGGAGGAGAGTTCGCAGGAGGACGACTATTGTTGATTTGGACTCAGAAGATGGGACCAGAGGAGTTCCTCAAAACCAAACAATCATCAATGGCGATCTTTATGTAAATTTGGCCAACAACAGCAGTTCTGCGAGTGAAAATGCTAAGAAGACACCTGAACCTCCCAAGGAGCCTGAAGCTCCTAAGGAGCCTGTTTTTAATTGCCCAATATGTATGTCCCCTTTGGTTGAAGAAATGTCAACAAGGTGTGGTCATATTTTTTGCAAGAATTGCATCAGGGCTGCTATATCTGCACAGGCTAAATGCCCTACCTGTAGAAAAAAGGTTACAAAGAACTCACTAATAAGGGTGTTTCTTCCTGCAACTAGTTAA 621 0.4815 MSWRSVRGSRKRKMDFELDLNRDPPLVREEEEEEEEGGPSRHQQHHHHQQEPQTPIVDVDAIDDDVVESSPRSFAQAKSNADERRRVRRRTTIVDLDSEDGTRGVPQNQTIINGDLYVNLANNSSSASENAKKTPEPPKEPEAPKEPVFNCPICMSPLVEEMSTRCGHIFCKNCIRAAISAQAKCPTCRKKVTKNSLIRVFLPATS* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g2322 206 MobiDBLite consensus disorder prediction 124 146 - -
Gso9g2322 206 MobiDBLite consensus disorder prediction 35 53 - -
Gso9g2322 206 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 107 204 IPR013083 -
Gso9g2322 206 ProSiteProfiles Zinc finger RING-type profile. 151 189 IPR001841 -
Gso9g2322 206 Pfam Zinc finger, C3HC4 type (RING finger) 150 188 - -
Gso9g2322 206 PANTHER ELFLESS, ISOFORM B 4 206 - -
Gso9g2322 206 SMART ring_2 151 188 IPR001841 -
Gso9g2322 206 MobiDBLite consensus disorder prediction 8 27 - -
Gso9g2322 206 MobiDBLite consensus disorder prediction 1 60 - -
Gso9g2322 206 ProSitePatterns Zinc finger RING-type signature. 166 175 IPR017907 -
Gso9g2322 206 SUPERFAMILY RING/U-box 150 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g2322 Gso-Chr9 47501578 47506221 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g2322 7 205 C3H Transcription Factor Family AT5G48655 42.857 4.80e-41 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g2322 K22651 - gmx:100778432 363.229