LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso9g2314	ATGACCATGGGAGATCATAATAACTGGGGAACTTCTGAACTTAGTCTTAATAATCAATATCAAAATCATAATCAAGTTGGACTTGATGTTCCTAAATTCAAGTCTGTTCAACCTCCCTCACTACTCTTCTCTCCCTCATCAATCTCCCCTTCTTCTTACTTCAACTTTTCATCTGCTTTCAGCCCTTCTGAGTTCTTGAACTCACCTTTGTTTTTTCCTTCTCCAAATATTTTTGCTTCTCCTACTACTGAGGCTTTGGTTGGCCAGAGCTTCAACTGGAGGAACGGTTCGGGCGAAGAACAACAGCGTGGCAAGGAGGATGAGAAAAACTCCTCCGACTTCTCTTTCCAAACCCAAATTCAATCTTCCTCAAACATGTTTCAAGTGGAACCGCTTAAGAAACAAGACATGTGGAAATTCAATGAACCTACAAAACAAACTGATTTTTCACCTGAGCGGACAGCAACAAAATCTGAATTCCCTTCAATTCAGAGCTTTTCCTCAGAGATGGCAGAAGGAAAACCAGAAATACAAAGTAGCTCAGTTCCCGGGTCTGGTTATTTTGACTACACAAGTGCATCTCAGTCTGTAAGAGAACAAAAGAGAACAGAAGATGGGTTCAACTGGAGAAAATATGGACAGAAACAAGTGAAAGGGAGTGAAAATCCTCGTAGTTATTACAAGTGCACACATCCAAATTGCTCAGTGAAGAAGAAAGTGGAGAAGTCTTTGGATGGACATATCACTGAAATAGTATATAAGGGCCAACATAGCCACCCAAAACCGCAGTCTACTAGAAGAACAAACTCTCAATCAATTCATCAACCTTCTTCGTCTTGCACAAACTCAGGGATAACTGATCATTCAGTGGTGACTCTAGGAAATCCACAAATGGATCATTTCTCCATACAAGAAGATTCTTCAGCTTCTGTTGGAGAGGAAGAGTTTGAGCAAACACCGCAAACCAGTTATTCCGGAGGAGACGGAGATAATCTTGGACCTGATGCCAAAAGATGGAAGGGAGATAACGAAAACGATGGCTATTCAGTCTCAGCAAGCAGATCTGTTAGAGAGCCTAGAGTTGTTGTTGAAACCACAAGCGAAATTGATATACTTGATGATGGCTTTAGGTGGAGGAAATATGGACAGAAAGTAGTCAAAGGAAACCCAAATGCAAGGAGCTATTACAAATGCACCGCCCCTGGTTGTTCAGTGAGAAAACACGTTGAGCGAGCCGCACATGACATCAAAGCTGTGATCACAACTTATGAAGGGAAGCACAACCATGATGTGCCTGCTGCACGTGGTAGCGGAAAATATAACCCGAACAGAAATTCTCAGAACAGCAACATATCAGCGCCTATAAGACCCTCGGCAGTGAATTGTTATTCTAACTCATCAAGTTTCACAAATTCTCTCTATAATAATACTAGGCTTCCAGCAACTGGAAATCAAGAATCATTTTCACTGGACAAGTTCAAGAATCCTGGAAGTTTTGGCTATTCAGATCTTAACAGACCAATGGGTTCACATACCAATCATGCACAATACACAGATGCTGCAAACTCAAGGGCCAAGGATGGGAGGAAGGATGATTCATTCCTTCAGTCATTTCTCTCAAAGGACTTCTAA	1632	0.4161	MTMGDHNNWGTSELSLNNQYQNHNQVGLDVPKFKSVQPPSLLFSPSSISPSSYFNFSSAFSPSEFLNSPLFFPSPNIFASPTTEALVGQSFNWRNGSGEEQQRGKEDEKNSSDFSFQTQIQSSSNMFQVEPLKKQDMWKFNEPTKQTDFSPERTATKSEFPSIQSFSSEMAEGKPEIQSSSVPGSGYFDYTSASQSVREQKRTEDGFNWRKYGQKQVKGSENPRSYYKCTHPNCSVKKKVEKSLDGHITEIVYKGQHSHPKPQSTRRTNSQSIHQPSSSCTNSGITDHSVVTLGNPQMDHFSIQEDSSASVGEEEFEQTPQTSYSGGDGDNLGPDAKRWKGDNENDGYSVSASRSVREPRVVVETTSEIDILDDGFRWRKYGQKVVKGNPNARSYYKCTAPGCSVRKHVERAAHDIKAVITTYEGKHNHDVPAARGSGKYNPNRNSQNSNISAPIRPSAVNCYSNSSSFTNSLYNNTRLPATGNQESFSLDKFKNPGSFGYSDLNRPMGSHTNHAQYTDAANSRAKDGRKDDSFLQSFLSKDF*	544

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso9g2314	543	MobiDBLite	consensus disorder prediction	427	456	-	-
	Gso9g2314	543	PANTHER	TRANSCRIPTION FACTOR WRKY FAMILY-RELATED	307	541	-	-
	Gso9g2314	543	PANTHER	TRANSCRIPTION FACTOR WRKY FAMILY-RELATED	19	290	-	-
	Gso9g2314	543	SUPERFAMILY	WRKY DNA-binding domain	199	262	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Gso9g2314	543	ProSiteProfiles	WRKY domain profile.	198	262	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Gso9g2314	543	SMART	WRKY_cls	203	261	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Gso9g2314	543	SMART	WRKY_cls	372	431	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Gso9g2314	543	MobiDBLite	consensus disorder prediction	439	456	-	-
	Gso9g2314	543	MobiDBLite	consensus disorder prediction	258	328	-	-
	Gso9g2314	543	MobiDBLite	consensus disorder prediction	253	352	-	-
	Gso9g2314	543	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	307	541	IPR044810	GO:0003700
	Gso9g2314	543	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	19	290	IPR044810	GO:0003700
	Gso9g2314	543	Gene3D	WRKY domain	189	263	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Gso9g2314	543	Pfam	WRKY DNA -binding domain	204	260	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Gso9g2314	543	Pfam	WRKY DNA -binding domain	373	429	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Gso9g2314	543	MobiDBLite	consensus disorder prediction	93	116	-	-
	Gso9g2314	543	Gene3D	WRKY domain	359	425	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Gso9g2314	543	ProSiteProfiles	WRKY domain profile.	367	432	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Gso9g2314	543	SUPERFAMILY	WRKY DNA-binding domain	365	432	IPR036576	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso9g2314	Gso-Chr9	47411844	47414893	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso9g2314	198	539	WRKY Transcription Factor Family	AT2G38470	53.631	1.12e-106	327

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Gso9g2314		WRKY	1.1e-23	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso9g2314	K13424		-	gmx:100776837	1052.35

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso18g1686	18	48948605	48951669	Gso9g2314	9	47411844	47414893	GST
	Gso9g2314	9	47411844	47414893	Gso1g1089	1	44508395	44511909	PCT
	Gso1g1089	1	44508395	44511909	Gso9g2314	9	47411844	47414893	PCT