Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g2298 ATGACAGATCCTGCTAGTTATGGGAGTCTTGAGCGTGATGTTGAGCAAGTAGTCTTTAGAAGATATTTACAGCCAGAAAAAGATTACCTATCGTTTTCACTTGTTTATAATAACGAGGAGCGAACACTTGATTTGATATGCAAGGACAAAGATGAGGTAGAGGTATGGTTTACAGGCCTTAAGACATTAATTTCTACTGGAAAGCTTAGGCGCATTGGAAGTGAATTATTTGATGATGGTGTTGATTTTACTCCAAAAGGTCGTCCTTTTGGTGCAGCACTAGAGTTTGGCATATGCATCACTCGTAATAACAAGGTCGCTTTTGATTTTGCTTCTCATGAGCCTTCATTGAATTTGGTAACCAGCACAGATGTGGGGTTAGAGAGTGCTAATAACATGCAACCAAGAACAAGTATTGGAGATGGTTTTCGTGTCAGCGTGTCGAGTACACCAAGTGTTTCGAGCACAGGATCGGGACCAGATGACATAGAATCACTAGGAGATGTTTATATATGGGGAGAGGTTTGGGCAGATGGTGTTTCACTTGATGGATTTTCCACTCAGGCCCCTTCCACAACAGATGTGTTGATTCCTAAGCCATTGGAGTCAAGTGTTGTTCTTGATGTTCAACAGATTGCATCTGGTGTGAGGCACATTGCTTTGGTAACAAGGCAAGGGGAGGTTTTCACTTGGGGAGAAGAATGTGGTGGAAGACTTGGTCATGGAATTGATAGAGATTTCGGTCGCCCTCAACTTGTTGAATTTTTGGCAGTTACTAACATTGATTTTGTTGCATGTGGAGAGAATCATACATGTGCTGTTTCTACATCTGATGATCTTTTCTCATGGGGTGATGGTACATACAATGTTGGACTTCTTGGTCATGGAACTGATGTTAGCCATTGGATACCAAAAAGAATTAGTACTGGCCCTTTAGAAGGGCTTCAAGTTATATCCGTTGCATGTGGCACATGGCATTCAGCACTAACAACTTCTAATGGAAAACTTTTCACCTTTGGTGATGGGACATTTGGAGTTTTAGGCCATGGAAACAGAGAAAGTATTCCATATCCAAAGGAGGTGCAATTGTTAAGTGGACTGAAAACCATTCAGGTTTCATGTGGAGTGTGGCACACTGCAGCTATTGTAGAGGTTACTTTTCAATCCGGTTCATATGTTTCTTCTAGGAAGCTTTTCACTTGGGGAGACGGCGACAAATATCGGTTGGGACATGGAAACAAGGAAACGTACCTTCAACCAACTTGTGTCTCTGCACTTATCGAGTATAATTTCCACCAGATAGCATGTGGACACACCATGACTGTTGCTCTCACTACATCTGGTCACATTTTTACTATGGGAAGCAATGAAAATGGTCAACTAGGAAACCCTTTGGCTGATGGAAAAGTACCTATCCTAGTACAAGACAAGTTGGTGGGTGAATTTGTTGAGGTAATATCATGTGGATCTCATCATGTTGCTGCCTTGTCATCAAGAAGTGAATTGTATACTTGGGGGAAAGGTGCCAATGGAAGATTGGGACATGGAGACATAGAGGATAGAAAATCACCAACAATAGTAGAATCCTTAAAAGATAGGCATGTAAAGAATATTTCTTGTGGCTCAAACTTTACATCTTGCATATGCATTCATAAATGGGTCTCTGGAGTTGACCAATCTGTTTGCACGGGTTGTAGACAACCATTTGGATTCACTAGAAAGAGGCACAATTGCTACAATTGTGGATTAGTGCATTGCCATGGTTGTAGTTCAAGAAAGGTATTGAAAGCATCATTGGCTCCAACACCAGGAAAACCTCATCGCGTGTGTGACTCTTGTTATAACAAGCTTAAAGCTGTTGAGGCATGTGCTAGTTCTAATCTTCATAGGAAAATGACCACAACACCTCGTAATTCCTTAGATACCAGGGAAAGATTTGGTCAAGGAGATGTAAAGTCTTCAAGACTAATTTTGCCTCCTATCACAGAACCAATGAAATTTCATCAGATAATGATGGCTAATAAGATGGGAAGCAAACATGATTATTCTTCCATGTCTCCAGCATCCCAAGTTCCATCACTTTTACAATTGAATGATATTGCATTTGGTAACTCAATAAGTTCAACTCAAAATGTTTTGAGGTCTGCTATAGCTCTTAGTCCACCACCAACTCCACCTCTCAATTCAAGACCAACATCTCCTTATTCAAGAAGGGCAAGCCCTCCACGTTCTAGAACTCCGGGATTTTCTAGAAGTCTTATTGATAGTTTGAGGAAGACAAATGAACTTTTGAATCAAGAAGTTTCAAAAATGCAAAACCAAATTCGAAGTGTAAGGCTAAAAAATGACATGGAAATTCAGAAGCTCCAAAAAAATGTCATGGAAGCTACCTCCTTTGCTGCAGAGGAATCTTCTAAGCATAAAGCCATGAAAGAAATTTGTGAGTCTACTGTGGATCAGATGAAGGAAATGATTGAGAAGTTGCCTCCAGACGTTTTAGATAGTGGAAATTGGAAAGTCGTGCTTACTCGAGCTGAGAATTTTCTAAAAGAAAATTCAGAATTTGAAACACCATCAAGTGCGAAGTCTCAACAACAACATGCACTTAATACACCTAACTTAAATACTAGCTCTTCTAAATTGCAAGAACATAGAATAGAAGAAAATAATGAAACTGTAGATGAAGGAAATGTTATTCAAGAAAGCAATAACTCATCTTTATCAAACAACGAGGCATCAATGCCTTCACAAAATGATTCAAAATCCCAAGACTCTTCAAGACCAGGCAAAGAAGGAGAAACAGAAGTCATTGAATTTGAACCTGGGGTACATGTGACACTAATAGTAAAGCCTGGTGGTGTCAGATTTTTCAAACAAGTTAAATTCAGTAAGCGAAGATTCCGTGAACATCAAGCAAAAGAGTGGTGGAGCAAAAATAAAGATAGAGTGCATAGGAAATATATTGCTCCACAAACTACAAATTCCGAAGGTACCGGATCATCTAACACTCTACCACCACCACCACCTACGAAAGAAAACATTGAGACAGTGTCTTCCTAA 3060 0.3984 MTDPASYGSLERDVEQVVFRRYLQPEKDYLSFSLVYNNEERTLDLICKDKDEVEVWFTGLKTLISTGKLRRIGSELFDDGVDFTPKGRPFGAALEFGICITRNNKVAFDFASHEPSLNLVTSTDVGLESANNMQPRTSIGDGFRVSVSSTPSVSSTGSGPDDIESLGDVYIWGEVWADGVSLDGFSTQAPSTTDVLIPKPLESSVVLDVQQIASGVRHIALVTRQGEVFTWGEECGGRLGHGIDRDFGRPQLVEFLAVTNIDFVACGENHTCAVSTSDDLFSWGDGTYNVGLLGHGTDVSHWIPKRISTGPLEGLQVISVACGTWHSALTTSNGKLFTFGDGTFGVLGHGNRESIPYPKEVQLLSGLKTIQVSCGVWHTAAIVEVTFQSGSYVSSRKLFTWGDGDKYRLGHGNKETYLQPTCVSALIEYNFHQIACGHTMTVALTTSGHIFTMGSNENGQLGNPLADGKVPILVQDKLVGEFVEVISCGSHHVAALSSRSELYTWGKGANGRLGHGDIEDRKSPTIVESLKDRHVKNISCGSNFTSCICIHKWVSGVDQSVCTGCRQPFGFTRKRHNCYNCGLVHCHGCSSRKVLKASLAPTPGKPHRVCDSCYNKLKAVEACASSNLHRKMTTTPRNSLDTRERFGQGDVKSSRLILPPITEPMKFHQIMMANKMGSKHDYSSMSPASQVPSLLQLNDIAFGNSISSTQNVLRSAIALSPPPTPPLNSRPTSPYSRRASPPRSRTPGFSRSLIDSLRKTNELLNQEVSKMQNQIRSVRLKNDMEIQKLQKNVMEATSFAAEESSKHKAMKEICESTVDQMKEMIEKLPPDVLDSGNWKVVLTRAENFLKENSEFETPSSAKSQQQHALNTPNLNTSSSKLQEHRIEENNETVDEGNVIQESNNSSLSNNEASMPSQNDSKSQDSSRPGKEGETEVIEFEPGVHVTLIVKPGGVRFFKQVKFSKRRFREHQAKEWWSKNKDRVHRKYIAPQTTNSEGTGSSNTLPPPPPTKENIETVSS* 1020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g2298 1019 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 566 624 IPR013083 -
Gso9g2298 1019 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 556 618 IPR017455 -
Gso9g2298 1019 ProSiteProfiles PH domain profile. 1 65 IPR001849 -
Gso9g2298 1019 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 167 225 IPR000408 -
Gso9g2298 1019 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 334 385 IPR000408 -
Gso9g2298 1019 MobiDBLite consensus disorder prediction 853 880 - -
Gso9g2298 1019 MobiDBLite consensus disorder prediction 893 923 - -
Gso9g2298 1019 MobiDBLite consensus disorder prediction 980 1019 - -
Gso9g2298 1019 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 372 382 IPR000408 -
Gso9g2298 1019 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 448 499 IPR000408 -
Gso9g2298 1019 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 226 277 IPR000408 -
Gso9g2298 1019 SUPERFAMILY FYVE/PHD zinc finger 552 627 IPR011011 -
Gso9g2298 1019 Pfam FYVE zinc finger 552 618 IPR000306 GO:0046872
Gso9g2298 1019 SUPERFAMILY RCC1/BLIP-II 167 553 IPR009091 -
Gso9g2298 1019 MobiDBLite consensus disorder prediction 731 750 - -
Gso9g2298 1019 CDD FYVE_like_SF 562 614 - -
Gso9g2298 1019 MobiDBLite consensus disorder prediction 853 936 - -
Gso9g2298 1019 PANTHER CHROMOSOME CONDENSATION REGULATOR RCC1 REPEAT PROTEIN 17 996 - -
Gso9g2298 1019 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 212 222 IPR000408 -
Gso9g2298 1019 Gene3D - 391 565 IPR009091 -
Gso9g2298 1019 Gene3D - 144 390 IPR009091 -
Gso9g2298 1019 SMART fyve_4 550 619 IPR000306 GO:0046872
Gso9g2298 1019 ProSiteProfiles BRX domain profile. 933 988 IPR013591 -
Gso9g2298 1019 SUPERFAMILY PH domain-like 18 64 - -
Gso9g2298 1019 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 396 447 IPR000408 -
Gso9g2298 1019 Pfam Regulator of chromosome condensation (RCC1) repeat 501 548 IPR000408 -
Gso9g2298 1019 Pfam Regulator of chromosome condensation (RCC1) repeat 333 382 IPR000408 -
Gso9g2298 1019 Pfam Regulator of chromosome condensation (RCC1) repeat 447 496 IPR000408 -
Gso9g2298 1019 Pfam Regulator of chromosome condensation (RCC1) repeat 398 444 IPR000408 -
Gso9g2298 1019 Pfam Regulator of chromosome condensation (RCC1) repeat 279 328 IPR000408 -
Gso9g2298 1019 Pfam Regulator of chromosome condensation (RCC1) repeat 226 274 IPR000408 -
Gso9g2298 1019 Pfam Transcription factor BRX N-terminal domain 802 836 IPR027988 -
Gso9g2298 1019 MobiDBLite consensus disorder prediction 717 750 - -
Gso9g2298 1019 PRINTS Chromosome condensation regulator RCC1 signature 228 244 IPR000408 -
Gso9g2298 1019 PRINTS Chromosome condensation regulator RCC1 signature 278 294 IPR000408 -
Gso9g2298 1019 PRINTS Chromosome condensation regulator RCC1 signature 320 336 IPR000408 -
Gso9g2298 1019 PRINTS Chromosome condensation regulator RCC1 signature 336 350 IPR000408 -
Gso9g2298 1019 PRINTS Chromosome condensation regulator RCC1 signature 437 455 IPR000408 -
Gso9g2298 1019 PRINTS Chromosome condensation regulator RCC1 signature 495 516 IPR000408 -
Gso9g2298 1019 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 278 333 IPR000408 -
Gso9g2298 1019 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 17 996 - -
Gso9g2298 1019 Coils Coil 754 781 - -
Gso9g2298 1019 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 500 551 IPR000408 -
Gso9g2298 1019 Pfam Transcription factor regulating root and shoot growth via Pin3 935 987 IPR013591 -
Gso9g2298 1019 Gene3D - 12 70 IPR011993 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g2298 Gso-Chr9 47238923 47244605 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g2298 936 988 Major Intrinsic Protein MIP AT1G31880 39.623 1.37e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g2298 - - gmx:100776643 1971.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1698 18 49232839 49240289 Gso9g2298 9 47238923 47244605 GST