Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g2274 ATGCTACAACGGCGGTTTCTGGAGACGGAGCTGAGCATGCCACCGTCGTACGGCGGCAGCGGCGCAAACAACACGCGCGACACGTTCATCAGCGACGCGAACTTCGACACAAACATGGTGATCATTCTGGCGGCGCTGCTGTGCGCTTTGATATGCGCGCTGGGCCTGAACTCCATCGCGCGGTGCGCGCTGAGGTGCGGGCGGCGCTTCGGCGACGAGACGGCGGAGCAGGCGGCTGCAAGGCTGGCGGGGACCGGGCTGAAGCGCCGCGAGCTCAGCCGCATCCCGGTGGCGGTGTACGGCGCCGCCGGAGGAGAAAACACTATTCCGGCGACGGAGTGCCCCATATGCCTCGGCGAGTTCGAGAAAGGGGACAAGGTTCGAATGTTGCCTAAATGCAACCACGGTTTCCACGTGAGGTGCATTGACACGTGGCTCTTGTCGCATTCCTCGTGCCCCAATTGCCGCCACTCGCTCCTAGAGAAAACCTCCGCCGCGCCGGAAAGTGGGTCGGGGCGGCGGAGCGAGGTGGTTGTTGTGGTGGAGCAGGCGAGTTGA 558 0.6416 MLQRRFLETELSMPPSYGGSGANNTRDTFISDANFDTNMVIILAALLCALICALGLNSIARCALRCGRRFGDETAEQAAARLAGTGLKRRELSRIPVAVYGAAGGENTIPATECPICLGEFEKGDKVRMLPKCNHGFHVRCIDTWLLSHSSCPNCRHSLLEKTSAAPESGSGRRSEVVVVVEQAS* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g2274 185 PANTHER RING-H2 FINGER PROTEIN ATL74 1 169 - -
Gso9g2274 185 SUPERFAMILY RING/U-box 108 165 - -
Gso9g2274 185 SMART ring_2 114 155 IPR001841 -
Gso9g2274 185 CDD RING-H2_EL5_like 113 156 - -
Gso9g2274 185 Pfam Ring finger domain 113 156 IPR001841 -
Gso9g2274 185 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 165 IPR013083 -
Gso9g2274 185 ProSiteProfiles Zinc finger RING-type profile. 114 156 IPR001841 -
Gso9g2274 185 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g2274 Gso-Chr9 46974925 46976512 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g2274 14 181 C3H Transcription Factor Family AT3G10910 55.682 2.87e-57 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g2274 K19040 - gmx:100814602 330.872