Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g2263 ATGGAAAATCTTGGTGGTTCTAGTCGTAGGAAAGCAATTGAGGAGCTTCTTAGAGGGCGTGATTCTGCCCAACAACTTAAGAGTGTCATCAATGGGACTTATGATGATGGATCAGCCACCCCATTTGCTCAACAACTTGTGAAAGAGGTGCTCATGTCCTTCACAAACTCCCTCTTGTTCTTGCACAACAACCCCACTTCTGAATCACATCATGTCTTCAATGTTCAAGTATGGGACTCTCCCAAGTCTGAGGACTCTCAAGAGAGCAATTGCAAAAGCTCCACCATTAAGGAACCAAGAGGGTGCTACAAGAGAAGAAGAACTGAACAAACATGGGAGAAGGAATCTGAAGCTCCAATTGATGACGGCCATCACTGGAGAAAGTATGGCCAAAAGGAGATCCTGAATGCCAAATTCCCTAGGAACTACTATAGGTGCACTCACAAATTTGACCAAGGTTGCCAAGCAACAAAACAGGTGCAAAGAGTTCAAGAGGAACCAATCCTATTCAAAACCACCTACTATGGGCACCATACTTGCAAGAACTTGGCAAACCCTGATATCATACTTGACCCCATGTCCCCTTCATCCTCTTCCAAGTTCCTTAGCTTTGACAACTCCTTTTCAACCCCATCCAAGCAAGAGTGCCCCTTTCTCTCATCTTCCAATAATTTCCCATCATCATCATCAGTGAAAAGGGAGTGCAAGGAGGAGGTCCCTCCCTCAATTTCCTCCAATGATTACCTCATCTCTTCTGATCTCACTTTTGATAGCTCACCAAGGCATCATGTCACTCTATCATCAACACTTGACTCTGAGTACAAGAGTGTGGACATTTCGGATGTCTTGTATGATTCTGCCCAGCTTGATTTTGTCTTTGAACCCTTCCTTGAAATTAGATGA 903 0.4419 MENLGGSSRRKAIEELLRGRDSAQQLKSVINGTYDDGSATPFAQQLVKEVLMSFTNSLLFLHNNPTSESHHVFNVQVWDSPKSEDSQESNCKSSTIKEPRGCYKRRRTEQTWEKESEAPIDDGHHWRKYGQKEILNAKFPRNYYRCTHKFDQGCQATKQVQRVQEEPILFKTTYYGHHTCKNLANPDIILDPMSPSSSSKFLSFDNSFSTPSKQECPFLSSSNNFPSSSSVKRECKEEVPPSISSNDYLISSDLTFDSSPRHHVTLSSTLDSEYKSVDISDVLYDSAQLDFVFEPFLEIR* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g2263 300 Pfam WRKY DNA -binding domain 121 181 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso9g2263 300 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 10 291 IPR044810 GO:0003700
Gso9g2263 300 SMART WRKY_cls 120 182 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso9g2263 300 ProSiteProfiles WRKY domain profile. 115 178 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso9g2263 300 SUPERFAMILY WRKY DNA-binding domain 118 181 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso9g2263 300 Gene3D WRKY domain 97 182 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso9g2263 300 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 10 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g2263 Gso-Chr9 46888305 46890297 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g2263 7 184 WRKY Transcription Factor Family AT3G56400 41.081 1.56e-38 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gso9g2263 WRKY 6.1e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g2263 - - gmx:100805895 593.964
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso9g2263 9 46888305 46890297 Gso3g0024 3 227491 229291 PCT
Gso3g0024 3 227491 229291 Gso9g2263 9 46888305 46890297 PCT