Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g2248 ATGCCGGTTCTGAGAATTCATGGATATGCCTTGGCTGTTTCGTTTTGTCTTATCATCTTCATAGCAGCCTCACAACGAACGGACCCTTCAGAAGTTAATGCGCTGATAGAGATCAAGAAAAGTTTGATTGATACTGACAACAATCTTAAGAACTGGAATAAAGGAGATCCATGTGCAGCAAACTGGACTGGGGTTTGGTGTTTTGATAAGAAGTTGGATGATGGGAACTTCCATGTTCGTGAGATCTACTTAATGACAATGAATCTCTCGGGAAGTCTATCACCTCAGCTTGGTCAGCTATCCCATCTTGAGATACTGGATTTCATGTGGAACAATCTGACAGGCACAATACCAAAGGAGATTGGAAATATTAGATCACTGAAACTCTTGCTCCTGAATGGTAATAAATTATCTGGTAGTTTACCAGATGAGCTTGGCCAACTTTCTAATTTGAATAGATTCCAAGTGGACGAAAACCAATTGTCAGGTCCTATACCAGAGTCATTTGCCAACATGACCAATGTTAAACACCTTCACTTGAACAACAACTCATTTAGCGGTGAACTTCCATCCACACTTTCAAAGCTATCAAATCTTATGCACTTGCTTGTGGACAACAATAATTTATCTGGCCATCTTCCACCAGAATACTCCATGTTAGATGGATTGGCAATACTCCAGCTTGATAACAACAATTTCAGTGGGAGTGAAATTCCTTCTGCCTATGCAAACCTAACCAGGCTAGTGAAATTAAGTCTACGAAACTGTAGTCTGCAAGGAGCTATTCCTGATTTCAGTTCAATACCCAAGCTTACCTATTTAGATCTTAGCTGGAATCAGATCACTGGACCCATACCATCAAATAAAGTGGCAGACAGTATGACAACTTTTGATCTGTCCAATAATCGTCTCAGCGGATCTATTCCTCACTTCTTGTATCCTCATCTTCAAAAATTGTCACTTGCAAACAATTTACTGTCTGGGTCTATCTCTGCTAACATATGGCTGAACATGTCCTTCAGTGCGAATGATAAACTTACAATTGATCTCCAGAACAACTCATTTTCGGATGTTTTGGGAAATCTGAACCCCCCAGAAAATGTTACCTTGAGGCTTTCTGGTAATCCTGTCTGCAATAATTCTAACATACAAAGTATTGGTCAATATTGTGGACCTGAAGCAGATAAGGCAGCCCAAGACTCAACAAATTCAACTGTCTGTCCAGTTCAATCTTGTCCAGTGGATTTCTTTTACGAATATGCCCCCTCTTCCCCAGTTCCTTGCTTTTGTGCAGCACCTCTGAGAATTGGATACAGGCTGAAAAGTCCAAGTTTTTCTTACTTTGCTCCCTATAGAACTAGTTTTGAAGACTATATAACTAGGTCCTTAGACTTAGATCTCTATCAACTATCAATAGATTCAGTTGCTTGGGAAGAGGGACCTCGTCTTAGAATGTATTTGAAACTCTTCCCTTCCTATAATGATTCCCGTTCTAATATGTTCAATGAAAGTGAGGTCCGTCGCATTAAAGGCATATATTCATCATGGCACTTTCCTCGCACTGATTTTTTTGGACCATGTGAACTGCTGAACTTCACTCTTCTTGGACCTTATGCAAATTTAAATATTGATTCGGAGAAGAAAAATAATAGTTTGGGCATAAAAATTGCTGCTGGTATAGCAGCAGCTGCTTCTGCTTTAGCAATATCTGCAATAATCATTTTCCTGATTTCTAGAAGAAATATGAAATACCAGAAGATTTTCAGGAAACGAATGTCTACTAATGTATCTATCAAAATAGATGGCATGAAAACATTTACTTACAAAGAACTGGCTATTGCTACCAACAAATTTAATATCTCAACTAAAGTTGGCCAAGGAGGATATGGGAATGTCTATAAAGGCATTTTATCTGATGAAACTTTTGTGGCTGTTAAGCGAGCAGAAAAAGGTTCCTTACAAGGACAAAAGGAGTTTCTGACTGAGATTGAGCTTTTGTCAAGGTTACACCATCGAAATCTTGTCTCGCTGATTGGATACTGTAATGAAGGAGAGCAGATGCTGGTTTATGAATTCATGCCCAATGGCACCCTAAGGGACTGGATTTCTGGTAAAAGTAGAAAAACCAAGGGAAGCCTAAATTTTAGTATGAGGTTGAGAATTGCAATGGGAGCAGCCAAAGGCATACTGTATCTGCATACAGAGGCTAACCCTCCTATATTCCACAGAGATATTAAAGCCAGTAACATTCTTCTGGACTCCAAGTTTACAGCTAAAGTGGCCGATTTTGGACTGTCACGGCTTGTACTAGACTTAGATGAAGAAGGAACTGCTCCTAAATATGTGTCAACAGTTGTGAAAGGAACTCCAGGTTACCTAGACCCAGAATATTTGTTGACTCATAAGCTGACTGACAAATGTGATGTCTATAGCCTGGGAATTGTGTATCTGGAGCTTTTGACAGGCATGCAACCAATATCACATGGGAAAAACATTGTCCGCGAGGTTAATACGGCTCGTCAATCTGGCACAATATATTCCATCATAGACAGCAGAATGGGGTTATATCCATCCGATTGCTTGGACAAGTTTTTAACTCTGGCCCTCAGATGTTGCCAAGACAATCCAGAGGAGAGGCCATCAATGCTAGATGTCGTGAGGGAACTGGAAGATATCATTGCAATGTTGCCTGAACCTGAAACTCTTTTATCAGATATTGTTAGCTTAGACAGTTCTGGTAACATAGCACCCCCATCATTTGCATCAACATCAGCATCAAATGTGACAAGGGAGGAGCAACACATGTCCTCATATGTTTCAGGAAGTGATCTTGTCAGTGATGTCATTCCCACCATTGTTCCTCGCTGA 2868 0.4013 MPVLRIHGYALAVSFCLIIFIAASQRTDPSEVNALIEIKKSLIDTDNNLKNWNKGDPCAANWTGVWCFDKKLDDGNFHVREIYLMTMNLSGSLSPQLGQLSHLEILDFMWNNLTGTIPKEIGNIRSLKLLLLNGNKLSGSLPDELGQLSNLNRFQVDENQLSGPIPESFANMTNVKHLHLNNNSFSGELPSTLSKLSNLMHLLVDNNNLSGHLPPEYSMLDGLAILQLDNNNFSGSEIPSAYANLTRLVKLSLRNCSLQGAIPDFSSIPKLTYLDLSWNQITGPIPSNKVADSMTTFDLSNNRLSGSIPHFLYPHLQKLSLANNLLSGSISANIWLNMSFSANDKLTIDLQNNSFSDVLGNLNPPENVTLRLSGNPVCNNSNIQSIGQYCGPEADKAAQDSTNSTVCPVQSCPVDFFYEYAPSSPVPCFCAAPLRIGYRLKSPSFSYFAPYRTSFEDYITRSLDLDLYQLSIDSVAWEEGPRLRMYLKLFPSYNDSRSNMFNESEVRRIKGIYSSWHFPRTDFFGPCELLNFTLLGPYANLNIDSEKKNNSLGIKIAAGIAAAASALAISAIIIFLISRRNMKYQKIFRKRMSTNVSIKIDGMKTFTYKELAIATNKFNISTKVGQGGYGNVYKGILSDETFVAVKRAEKGSLQGQKEFLTEIELLSRLHHRNLVSLIGYCNEGEQMLVYEFMPNGTLRDWISGKSRKTKGSLNFSMRLRIAMGAAKGILYLHTEANPPIFHRDIKASNILLDSKFTAKVADFGLSRLVLDLDEEGTAPKYVSTVVKGTPGYLDPEYLLTHKLTDKCDVYSLGIVYLELLTGMQPISHGKNIVREVNTARQSGTIYSIIDSRMGLYPSDCLDKFLTLALRCCQDNPEERPSMLDVVRELEDIIAMLPEPETLLSDIVSLDSSGNIAPPSFASTSASNVTREEQHMSSYVSGSDLVSDVIPTIVPR* 956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g2248 955 Pfam Protein kinase domain 619 887 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso9g2248 955 SUPERFAMILY Protein kinase-like (PK-like) 603 910 IPR011009 -
Gso9g2248 955 ProSiteProfiles Protein kinase domain profile. 618 893 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso9g2248 955 ProSitePatterns Serine/Threonine protein kinases active-site signature. 740 752 IPR008271 GO:0004672|GO:0006468
Gso9g2248 955 Gene3D Transferase(Phosphotransferase) domain 1 693 899 - -
Gso9g2248 955 SUPERFAMILY L domain-like 44 384 - -
Gso9g2248 955 Gene3D Ribonuclease Inhibitor 293 390 IPR032675 -
Gso9g2248 955 CDD STKc_IRAK 624 892 - -
Gso9g2248 955 Gene3D Ribonuclease Inhibitor 190 292 IPR032675 -
Gso9g2248 955 Gene3D Ribonuclease Inhibitor 28 189 IPR032675 -
Gso9g2248 955 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 10 924 - -
Gso9g2248 955 Gene3D Phosphorylase Kinase; domain 1 588 692 - -
Gso9g2248 955 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 10 924 - -
Gso9g2248 955 ProSitePatterns Protein kinases ATP-binding region signature. 624 646 IPR017441 GO:0005524
Gso9g2248 955 Pfam Leucine rich repeat N-terminal domain 29 67 IPR013210 -
Gso9g2248 955 SMART serkin_6 618 893 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g2248 Gso-Chr9 46751861 46761646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g2248 5 901 Receptor kinase-like Gene Family AT5G01950 60.552 0.0 1078
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Gso9g2248 Pkinase 1.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g2248 - - gmx:100809775 1853.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1762 18 50041508 50051564 Gso9g2248 9 46751861 46761646 GST