Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g2238 ATGGCCGCAAATTCTGGGAATATCTCGTTTGCGTCGTCTCAGTCTAGTTCACAGATTCATGGGAGCACTGATACTGTCCAGGTTGCAGTGTGTTCTCTTTGTCAAAAGGCCCTATCACCTGATAATGAGATGGCAAGCGATCTTGCTAGCAGTGGTGTGTGTGGTGATTGTAAATTTTTGTTACTTGAAGACTTTGGGAATCATACAGTTACCCAAAGCTCACGAAGGAGGCTTAGAGGAAGATTCAGGCACAATAGTTCTGAATCCGTTGAGAATAATTTCTCACAACAGATTCCCCATGTGGTTAATACTGTGAGACAACATCAGTCAGCTGTGTCTGGGGAGGATGATCAACTTGTAGATGGTGATACCCCTGCTTGGTCATTGCAATATGCTAGTACACATACTACCCCTAGTGGGTCTAGAAGGTGGAGGCAGGTTCTCTCTGACACTGACAGTGATGGTTTTGATAATTGGAATTCTCTTTATGGTGAAAATGAATCTAGTGCGAGTTTTAGACAGTACAGAGTTCCCCATGGCGAGACTGATTCTTTCTCTCACAGTGCTTATGGAGGCGACTCAGATATCTCTATGGATACTCATAGTTTTGAAGGCACTGGAGTCTTTAATTTACCAGATGAAGGAGATGAGTTTGACAGTGATACTGACATAGATCCAATGCATGCTGGTCTCAGCCAATGGATTTCTACTGATGAAGATGATGAAGAAGAGGAGGAGGAGGAGGAGGAGGGGGATAGGGAATGGGAATTAGCCGAGGCTGAGGAAGCTGAAGCCACATCCCACCTTCAAATTTTTTTCACCTCTAGTCCAAGTGAGAGCAGGGATCGCATTAATTCTACTGAATCTGGGGGAATGTTTAGCCAGATAATCCGAGAGACCTGGCATGGTTTTGAGGATGTTGATTTACCTCATGGAGCAAACTTTGGGGATTATCTTGATGCTAGACATTTTGAAGATCTGCTTGAGCATCTGGCTGAGAATGACAGCTCAAGACGAGGAGCGCCTCCTGCTGCTGTGTCTTTCGTGAATAATCTGCCACGTGTAGTCATTGGCAAGGAACATGAGAAGCACGGCGAACTAGTTTGTGCCATTTGCAAGGATGTCTTGGCACCCCGCACTGAAGTAAATCAACTTCCATGCTCTCACCTTTATCACATCAATTGCATTTTGCCATGGTTGAGTGCCCGAAATTCATGTCCTCTTTGTCGGTACGAACTTCCAACTGATGATAAGGACTATGAAGAGGGAAAGCAGAACATTGATAGTAGAAATGTGATCCATGAGAGGCAACGAATAGATGTAACAGATGATAGTTATTCTGATGTTTCTGATGGAGATGAGGTGAATGGTAGTGGTCAAGGTGGAATACGGCAAAGACTTCTGAGCTCAGGTTCCACTGTGGATTCTTCTGCAACAAGAAGTGGTAGAGGAAGATGGTTTTTTCTTGCTGCAGCTCCAATTGTTAGTCTAGTGGGCATTGTTCTTGTCTTGTGGTTGGGTAACAACTCTCAGAATGAAGGAAGTAGACATCTGGGCAGTCACTACTTATCCGGGCAAAACCAACACGCTGTTCATGCTTATTCCTCTCCAAACCAGAGGGAGAGTAGAAGCAGAAGGTGGTGGTGCCCATTTTAA 1656 0.4469 MAANSGNISFASSQSSSQIHGSTDTVQVAVCSLCQKALSPDNEMASDLASSGVCGDCKFLLLEDFGNHTVTQSSRRRLRGRFRHNSSESVENNFSQQIPHVVNTVRQHQSAVSGEDDQLVDGDTPAWSLQYASTHTTPSGSRRWRQVLSDTDSDGFDNWNSLYGENESSASFRQYRVPHGETDSFSHSAYGGDSDISMDTHSFEGTGVFNLPDEGDEFDSDTDIDPMHAGLSQWISTDEDDEEEEEEEEEGDREWELAEAEEAEATSHLQIFFTSSPSESRDRINSTESGGMFSQIIRETWHGFEDVDLPHGANFGDYLDARHFEDLLEHLAENDSSRRGAPPAAVSFVNNLPRVVIGKEHEKHGELVCAICKDVLAPRTEVNQLPCSHLYHINCILPWLSARNSCPLCRYELPTDDKDYEEGKQNIDSRNVIHERQRIDVTDDSYSDVSDGDEVNGSGQGGIRQRLLSSGSTVDSSATRSGRGRWFFLAAAPIVSLVGIVLVLWLGNNSQNEGSRHLGSHYLSGQNQHAVHAYSSPNQRESRSRRWWCPF* 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g2238 551 Pfam Ring finger domain 369 410 IPR001841 -
Gso9g2238 551 Coils Coil 551 551 - -
Gso9g2238 551 SMART ring_2 369 409 IPR001841 -
Gso9g2238 551 SUPERFAMILY RING/U-box 352 416 - -
Gso9g2238 551 MobiDBLite consensus disorder prediction 236 256 - -
Gso9g2238 551 CDD RING-H2_PA-TM-RING 368 410 - -
Gso9g2238 551 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 248 475 - -
Gso9g2238 551 MobiDBLite consensus disorder prediction 443 464 - -
Gso9g2238 551 PANTHER OS06G0101300 PROTEIN 248 475 - -
Gso9g2238 551 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 329 416 IPR013083 -
Gso9g2238 551 MobiDBLite consensus disorder prediction 196 256 - -
Gso9g2238 551 ProSiteProfiles Zinc finger RING-type profile. 369 410 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g2238 Gso-Chr9 46672770 46675864 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g2238 22 551 C3H Transcription Factor Family AT5G01980 43.297 3.76e-122 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g2238 - - gmx:100797923 1050.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1771 18 50131816 50134984 Gso9g2238 9 46672770 46675864 GST