Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g2217 ATGGAAGGAAGAGAAGGGATAAGTTCTGGGGTTACAGTGATAGGAGCAGAAGCTCCATCAGCCTATCACATGGCACCAAGGAGTGAAGCTCCAAGCCAAGTTCCTCCACCTGTTCCTGAAGCAACAGCTGGAGCTATTGGTGTCTCACCAGCGAGTGTGGGATTGGATGGAACAGCAGCTAAGAAGAAAAGGGGTAGACCAAGGAAATATGGGCCAGATGGGTTGAACTCTATGGCATTGTCACCCATTCCAATCTCATCTTCAGCTCCATTTGCTAATGAATTCTCATCCGGGAAGCAGCGGGGGAAACCGCGAGCGATGGAGTACAAGCTGCCGAAGAAAGTTGGAGTGGATCTTTTTGGTGATTCTGTTGGTACAAACTTTATGCCCCATATCATTGCGGTCAATACTGGCGAGGACATTACAATGAAGGTTATATCTTTTTCCCAACAAGGACCCCGTGCTATATGCATCCTATCTGCTAGTGGTGTAATTTCAAATGTTACACTTCGTCAGCCTGATTCTTCTGGGGGAACCTTGACCTATGAGGGCCGTTTTGAGATACTTTCATTATCTGGATCATTCATGCCTACTGACAACCAAGGAACAAGAAGCAGATCAGGTGGGATGAGCGTTTCATTGTCAAGTCCAGATGGTCGCATTGTAGGTGGTGGAGTTGCTGGTCTCCTTGTAGCTGCTGGTCCTGTGCAGGTGGTGGTGGGAAGCTTTTTGCCAAACAACCCGCAAGATAAGAAACCAAAGAAGCCAAAGTCTGATTATGCACCAGCTAATGTCACCCCTTCCATTGCAGTGTCTTCTGCGCCACCCCCTACTAATGGTGAAAAGGAGGATGTCATGGGTGGACACCTACTGCACAACAACTCAGGAACAACCCTTAACTCGAACTTTTCTCCTCCCTCGGCCTTTCGTCGAGAAAACTGGGTTAACATGCACTCCATGGCCGACTCGATGAAGTCGGTTACTGACATTAACATATCTCTTCCTGATAGTTAA 1014 0.4773 MEGREGISSGVTVIGAEAPSAYHMAPRSEAPSQVPPPVPEATAGAIGVSPASVGLDGTAAKKKRGRPRKYGPDGLNSMALSPIPISSSAPFANEFSSGKQRGKPRAMEYKLPKKVGVDLFGDSVGTNFMPHIIAVNTGEDITMKVISFSQQGPRAICILSASGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMPTDNQGTRSRSGGMSVSLSSPDGRIVGGGVAGLLVAAGPVQVVVGSFLPNNPQDKKPKKPKSDYAPANVTPSIAVSSAPPPTNGEKEDVMGGHLLHNNSGTTLNSNFSPPSAFRRENWVNMHSMADSMKSVTDINISLPDS* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g2217 337 Pfam Plants and Prokaryotes Conserved (PCC) domain 130 243 IPR005175 -
Gso9g2217 337 MobiDBLite consensus disorder prediction 291 306 - -
Gso9g2217 337 ProSiteProfiles PPC domain profile profile. 125 266 IPR005175 -
Gso9g2217 337 SUPERFAMILY AF0104/ALDC/Ptd012-like 128 247 - -
Gso9g2217 337 MobiDBLite consensus disorder prediction 244 306 - -
Gso9g2217 337 CDD DUF296 130 243 IPR005175 -
Gso9g2217 337 Gene3D - 130 261 - -
Gso9g2217 337 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 336 IPR039605 GO:0003680
Gso9g2217 337 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 1 336 - -
Gso9g2217 337 MobiDBLite consensus disorder prediction 20 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g2217 Gso-Chr9 46513960 46519255 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g2217 10 274 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 56.376 4.96e-96 287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g2217 - - gmx:100791563 606.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1794 18 50394351 50399722 Gso9g2217 9 46513960 46519255 GST
Gso9g2217 9 46513960 46519255 Gso1g1217 1 48147801 48155028 PCT
Gso9g2217 9 46513960 46519255 Gso3g0187 3 2484240 2491265 PCT
Gso1g1217 1 48147801 48155028 Gso9g2217 9 46513960 46519255 PCT
Gso3g0187 3 2484240 2491265 Gso9g2217 9 46513960 46519255 PCT