Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g2215 ATGATGAGCAGCGGTAGTGGTAGTGGCAGCAGTAGTGGTAGCCCTTGTGGTGCTTGCAAGTTCTTGAGGAGGAAGTGTATTCCGGGTTGTATATTTGCTCCGTACTTTGATTCAGAGCAAGGTACAAGCCATTTTGCGGCGGTGCACAAGGTTTTTGGGGCCAGCAATGTGTCCAAGCTTCTCCTTAGCATTCCAGTGCATAGGAGGCTTGATACGGTCATCACCATTTGTTATGAAGCACAATCAAGGATCAGAGATCCTGTTTATGGCTGTGTTTCCCACATCTTTGCCCTTCAGCAACAGGTGGTGAGCTTACAAGCAGAACTCTCTTACCTACATGGCCACCTTGCTCAAATGGAGTTACCTCAACCACCACCACCTCTTCCACTGCCACAAACGATGGTGGCACCACCGCCCGGTTTCTTGATTGCAGACCTACCGTCCGCCACCGTGGCGGCAGCGGCGGCCACCACCTATGATTTGTCTTCACTTTTTGATCCACTGGGCCAAACTTCATGGGCCATGCAACAGAGAGCCATAGACCCACGTCAATACAACATGGCTGCTGCTCCATCAACCGCCACTACTGGTGCTGACATTCAAGCAGTGGCAAGTGACATTCCTCATAGGCACGGGTCTCCTCCATCTCCTCCTGCGTCAAGCTCCAATGCTTCACCATCTCTATCGCTTTCTAAATGA 699 0.5122 MMSSGSGSGSSSGSPCGACKFLRRKCIPGCIFAPYFDSEQGTSHFAAVHKVFGASNVSKLLLSIPVHRRLDTVITICYEAQSRIRDPVYGCVSHIFALQQQVVSLQAELSYLHGHLAQMELPQPPPPLPLPQTMVAPPPGFLIADLPSATVAAAAATTYDLSSLFDPLGQTSWAMQQRAIDPRQYNMAAAPSTATTGADIQAVASDIPHRHGSPPSPPASSSNASPSLSLSK* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g2215 232 MobiDBLite consensus disorder prediction 190 232 - -
Gso9g2215 232 ProSiteProfiles LOB domain profile. 14 116 IPR004883 -
Gso9g2215 232 Pfam Lateral organ boundaries (LOB) domain 15 112 IPR004883 -
Gso9g2215 232 PANTHER LOB DOMAIN CONTAINING PROTEIN 4 211 - -
Gso9g2215 232 PANTHER LOB DOMAIN-CONTAINING PROTEIN 18 4 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g2215 Gso-Chr9 46490175 46494263 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g2215 18 232 AS2 family AT2G45420 57.456 7.22e-77 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gso9g2215 LOB 9e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g2215 K21994 - gmx:100790517 374.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso9g2215 9 46490175 46494263 Gso1g1224 1 48289590 48294711 PCT
Gso9g2215 9 46490175 46494263 Gso3g0184 3 2431209 2436247 PCT
Gso1g1224 1 48289590 48294711 Gso9g2215 9 46490175 46494263 PCT
Gso3g0184 3 2431209 2436247 Gso9g2215 9 46490175 46494263 PCT