Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g2195 ATGGGTAGAGGAAGGGTTGAGCTGAAGAGGATTGAGAACAAAATAAATCGGCAAGTTACCTTCTCGAAAAGAAAGACAGGTTTGTTGAAGAAAGCCAAAGAGCTCTCAGTGCTGTGTGATGCTGAGGTCGCCCTTGTCATTTTCTCACCTCGTGGCAAGCTCTTCACCTTTCCAGACGATGCTCAAAGTATTATAAAAACCTATGATCGATACCGGAAGTACTCTAATCAAGATGGCAATGTTGAACTTGAAAATCAGGGCTGGTACCAAGAAATGTCAAAACTAAATGAAAAGTATGAAGCTGTTCAAAAGACACAAAGGCGTTTGCATGGGGAAGATCTTGGACCACTGAGCATAAAAGAGTTGCAAATTCTTGAGGAGCAACTTGAAAAAGCTTTATCACAAGCTAGGCAGAGGAAGACACAACTGATTATTGAACATGTGGAAGAGCTTCGCCAAAAGGAACGTCATCTTGAAGACCTTAGACTCAAGGTTTTGCACTATGACATCGACAACCAACAATTCCAGCATAACATGAATCATATTAGTGCAAATCTTGAGCCTTATGGATTTAATCTCAAAGCAAGTCTGTGGGGCTCTACTTCCACTAGTGCTGCTGGAGATGGGAGCTTTCCCTTGCTGCCTTCCCAAACCTACCCTGAGCCTTTCTTGCAAATAGGGTATTCTGTTCAAGGTGAGCCATCCATTGTCCCAAAGACCATGGCCAGTGAGACTAATTTTCAAGGATGGTTCCTCTGA 759 0.4295 MGRGRVELKRIENKINRQVTFSKRKTGLLKKAKELSVLCDAEVALVIFSPRGKLFTFPDDAQSIIKTYDRYRKYSNQDGNVELENQGWYQEMSKLNEKYEAVQKTQRRLHGEDLGPLSIKELQILEEQLEKALSQARQRKTQLIIEHVEELRQKERHLEDLRLKVLHYDIDNQQFQHNMNHISANLEPYGFNLKASLWGSTSTSAAGDGSFPLLPSQTYPEPFLQIGYSVQGEPSIVPKTMASETNFQGWFL* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g2195 252 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gso9g2195 252 Coils Coil 119 164 - -
Gso9g2195 252 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Gso9g2195 252 Gene3D - 13 91 IPR036879 GO:0003677|GO:0046983
Gso9g2195 252 Pfam K-box region 84 160 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso9g2195 252 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Gso9g2195 252 PANTHER MADS-BOX TRANSCRIPTION FACTOR 6 1 181 - -
Gso9g2195 252 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gso9g2195 252 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gso9g2195 252 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gso9g2195 252 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 181 - -
Gso9g2195 252 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gso9g2195 252 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gso9g2195 252 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gso9g2195 252 ProSiteProfiles K-box domain profile. 85 181 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g2195 Gso-Chr9 46291133 46296010 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g2195 1 252 MADS-box Gene Family AT2G45650 51.311 1.24e-76 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gso9g2195 K-box 2.6e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g2195 K09264 - gmx:100797002 413.69