Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g2187 ATGCAAAACTCAAACCCATCATCATCTTCCCCCCCTTCCCCTCCTCTGTTGGACACCGCACCGTTCCTCCCCCGGAGCCGCCGCCGCGCGCCGCCGTCTCTGCGCACGGCGGCGACCTTCTTCCGGCGTGCGAGCGGGCGGCGCATGATGCTCCGGGAGCCGTCGGTGCGTGTGCGGGAGGCTGCAGCGGCGGAGGTGGAGGGCCGGCAGAGCGAGTGGGCGTACTCGCGGCCGGTGGTGGCGCTCGACGTCGCGTGGAACGCCGCGTTCCTCGCGATCGGCGCGTCGGTTCTCGCGCTCAGCGCCGACGAGGACCCCTGCGTGCCACTCAGGGCGTGGATTGTGGGGTACCTGCTGCAGGGCGCGTTGCACTCTCTCTGCGTCGTTGCTGAGTTCACAAGAAGAAGAACAACAACAATTAGTGGGACCCACTCCGGTTCTAACGTTGAATGGAGCTTCAGTTCTGAGAGTGATGAAGAGTTTTATCCTTCGGAACAGTTTCTCGAGGGTGACGGAAACAGCATCACAAAACACATTGAGTCTGCAAATACCATGCTTTCATTCATATGGTGGATTGTTGGGTTCTACTGGGTAACTGCTGGTGGCCAGAGTTTGACAAGGGATTCACCTCAGCTTTACTGGCTCTGTATCACATTTCTTTCTTTCGACGTCATGATTGTACTCATCTGTGTTGCTGTTGCATGTCTTATTGGAATCGCTGTTTGCTGTTGTCTGCCGTGCATACTTGCCATTCTGTATGTGGTGGCAGATCAGGAAGGGGCAACGAAGGAAGAGATTGAGCAGTTGCCAAAATATAAGTTCATAATAATAAAGGAATTTAAGAAAGAAGGTGATATTGAAGAATCTTCAAGAGGAATAATGACCGAATCTGAGAGTGAGACAGCCACCGAACATGTTATTGCCTTAGAAGATGCAGAATGCTGCATCTGCCTTTCTGCCTATGATGATGGTGCTGAGCTCAGAGAACTTCCTTGCAATCACCATTTTCACTGCACATGCATAGACAAATGGCTGCTAATCAATGCTACTTGCCCTCTCTGCAAGTTTAACATTTTGAGGACTGGCAACCACCATCAAGAAGTTTGA 1107 0.5276 MQNSNPSSSSPPSPPLLDTAPFLPRSRRRAPPSLRTAATFFRRASGRRMMLREPSVRVREAAAAEVEGRQSEWAYSRPVVALDVAWNAAFLAIGASVLALSADEDPCVPLRAWIVGYLLQGALHSLCVVAEFTRRRTTTISGTHSGSNVEWSFSSESDEEFYPSEQFLEGDGNSITKHIESANTMLSFIWWIVGFYWVTAGGQSLTRDSPQLYWLCITFLSFDVMIVLICVAVACLIGIAVCCCLPCILAILYVVADQEGATKEEIEQLPKYKFIIIKEFKKEGDIEESSRGIMTESESETATEHVIALEDAECCICLSAYDDGAELRELPCNHHFHCTCIDKWLLINATCPLCKFNILRTGNHHQEV* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g2187 368 Pfam Ring finger domain 313 355 IPR001841 -
Gso9g2187 368 CDD RING-H2_RNF111_like 313 357 - -
Gso9g2187 368 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 6 368 - -
Gso9g2187 368 SMART ring_2 314 354 IPR001841 -
Gso9g2187 368 MobiDBLite consensus disorder prediction 1 31 - -
Gso9g2187 368 ProSiteProfiles Zinc finger RING-type profile. 314 355 IPR001841 -
Gso9g2187 368 PANTHER TARGET OF ERK KINASE MPK-1 6 368 - -
Gso9g2187 368 SUPERFAMILY RING/U-box 298 360 - -
Gso9g2187 368 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 291 360 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g2187 Gso-Chr9 46198685 46203844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g2187 9 366 C3H Transcription Factor Family AT1G68070 47.354 3.18e-112 329
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g2030 18 53067333 53072186 Gso9g2187 9 46198685 46203844 GST