Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g2180 ATGGCTAATCATCGTCGGTTCTACGACTACCAAACTGAAATCATGGTGGAAGATGGCGATGAGGTTGCGGTAGATGCTCGTTCCACAGAAGACTGGTTGTTGCATGCACAAGAACTTGTTCCTGTTGTCATTGATAAGGCAAGAGAGGTCAAGGGATTTGCCGGTAGATGGAAGATGATTGTCGCAAAACTGGAACAGATCCCTTTGCGGTTATCGGATTTGTCAAGCCATCCATGCTTCTCGAAGAATGCTCTTTGCAAGGAGCAGTTGCAGGCTGTGTCAAAGACACTTGGGGAAGCGATTGAATTGACTGAGTTATGTTTGAAGGAGAAGTATGAGGGTAAGCTTCGGATGCAGAGCGATCTAGATTCATTGTCTGGGAAGCTTGATTTGAATTTGAGGGATTGTGGGCTTCTGATCAAGACTGGTGTGCTTGGTGAGGCTACTTTGCCATTGGCTGTGTCTAGTTCTGTGGCAGAATCAGATGTTGCAACATACAACAACATAAGGGAGTTGCTGGCACGCCTTCAGATCGGGCACTTGGAAGCGAAGCACCGAGCTTTAGACAGCGTCGTTGAGGCCATGAAGGAGGATGAGAAGAGTGTTTTATCTGTTCTTGGTCGGAGCAATATTGCTGCTTTGGTTCAATTGCTTACAGCTACCTCTCCCAGGATAAGGGAGAAAACAGTTACTGTTATAAGCTCGCTTGCAGAATCCGGTAGCTGCGAAAATTGGCTAGTTTCTGAAGGAGTTCTGCCACCTCTTATAAGGCTTGTTGAATCTGGCAGCACGGTGGGGAAGGAAAAGGCCACAATATCCCTTCAGAGGTTGTCGATGTCAGCCGAAACAGCACGAGCAATCGTGGGACACAGTGGGGTTCGTCCATTGGTTGAACTTTGTCAAATCGGTGATTCTGTGTCACAGGCCGCGGCTGCGTGTACTCTGAAGAACATATCAGCTGTGCCTGAGGTTAGACAAGCTTTGGCTGAAGAAGGGATTGTGAGGGTAATGATCAATCTGCTTAACTGTGGAATTCTGTTAGGTTCGAAAGAGCATGCTGCAGAGTGCTTGCAGAACCTCACTGCAAGCAATGAGAATCTAAGGAGGAATGTCATATCAGAAGGTGGTGTTAGGAGTCTTCTGGCTTATCTTGATGGTCCACTTCCTCAGGAATCCGCGGTTGGAGCATTGAGGAACTTGGTTGGATCAGTTCCTGAGGAATCCTTGGTTTCCCTTGGTTTGATCCCCCGTTTGGCTCACGTGTTGAAGTCCGGATCCTTAGGTGCTCAGCAAGCAGCTGCAGCCGCGATATGTCGGGTTTGCAGCTCCACAGACATGAAGAAAATGGTTGGTGAAGCTGGCTGCATCCCTCTCCTTGTGAAGATGCTTGAGGCCAAGTCAAACAGTGTTAGAGAGGTTGCTGCCCAAGCAATTGCAAGCTTGATGGTTGTGTCTCAGAATCGAAGAGAGGTTAAGAAGGATGACAAGAGTGTGCCAAACTTGGTTCAGTTGCTTGATCATAGTCCTCAGAACACTGCAAAAAAATATGCAGTTACTTGCCTTGGATCACTTTCTTCATGTAAGAAATGTAAGAAGCTTATGATCTCATATGGGGCAATTGGGTATCTGAAGAAACTTACTGAGATGGACATTCCAGGAGCTAAAAAGCTGCATGAAAGGTTGGAAAGAGGGAAATTTAGAAGTTTATTTAGCAAGAAATAG 1722 0.4663 MANHRRFYDYQTEIMVEDGDEVAVDARSTEDWLLHAQELVPVVIDKAREVKGFAGRWKMIVAKLEQIPLRLSDLSSHPCFSKNALCKEQLQAVSKTLGEAIELTELCLKEKYEGKLRMQSDLDSLSGKLDLNLRDCGLLIKTGVLGEATLPLAVSSSVAESDVATYNNIRELLARLQIGHLEAKHRALDSVVEAMKEDEKSVLSVLGRSNIAALVQLLTATSPRIREKTVTVISSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAETARAIVGHSGVRPLVELCQIGDSVSQAAAACTLKNISAVPEVRQALAEEGIVRVMINLLNCGILLGSKEHAAECLQNLTASNENLRRNVISEGGVRSLLAYLDGPLPQESAVGALRNLVGSVPEESLVSLGLIPRLAHVLKSGSLGAQQAAAAAICRVCSSTDMKKMVGEAGCIPLLVKMLEAKSNSVREVAAQAIASLMVVSQNRREVKKDDKSVPNLVQLLDHSPQNTAKKYAVTCLGSLSSCKKCKKLMISYGAIGYLKKLTEMDIPGAKKLHERLERGKFRSLFSKK* 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g2180 573 Gene3D - 447 560 IPR011989 -
Gso9g2180 573 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 15 573 - -
Gso9g2180 573 SUPERFAMILY ARM repeat 170 550 IPR016024 -
Gso9g2180 573 SMART arm_5 321 362 IPR000225 GO:0005515
Gso9g2180 573 SMART arm_5 403 442 IPR000225 GO:0005515
Gso9g2180 573 SMART arm_5 363 402 IPR000225 GO:0005515
Gso9g2180 573 SMART arm_5 484 526 IPR000225 GO:0005515
Gso9g2180 573 SMART arm_5 443 483 IPR000225 GO:0005515
Gso9g2180 573 SMART arm_5 280 320 IPR000225 GO:0005515
Gso9g2180 573 SMART arm_5 198 238 IPR000225 GO:0005515
Gso9g2180 573 Pfam Armadillo/beta-catenin-like repeat 444 481 IPR000225 GO:0005515
Gso9g2180 573 PANTHER ARMADILLO/BETA-CATENIN-LIKE REPEAT PROTEIN 15 573 - -
Gso9g2180 573 Coils Coil 350 370 - -
Gso9g2180 573 Gene3D - 161 346 IPR011989 -
Gso9g2180 573 Gene3D - 347 446 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g2180 Gso-Chr9 46090035 46093756 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g2180 415 556 U-box Gene Family AT2G23140 29.167 3.17e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g2180 - - gmx:100781453 1023.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g2013 18 52727048 52730738 Gso9g2180 9 46090035 46093756 GST