Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g2178 ATGTTGGGTTCAGGCACCAATTTGGTGACAACGGTCATTGGGTTTGGGATGAGTGCCACTTTCATTGTGTTTGTGTGCACCAGAATCATTTGTGGAAGGCTAAGAGGGGGTGTTGAATCTCGGATGATGTATGAGATTGAATCAAGAATTGATTTAGAACGGCCAGAACATCATGTTAATGACCCTGACTCCGATCCTGTTCTGCTCGATGCAATCCCTACTTTGAAGTTCAACCAAGAGGCTTTCAGTTCCCTTGAACACACACAGTGTGTAATATGTTTGGCAGATTACAAAGAAAGAGAAGTATTGCGGATCATGCCCAAATGTGGCCACACTTTTCATCTTTCTTGCATTGATATATGGCTGAGAAAGCAATCTACCTGTCCAGTATGCCGTCTGCCGTTGAAAAACTCTTCCGAAACAAAACATGTGAGACCTGTGACATTTACCATGAGCCAATCCCTTGACGAGTCTCACACATCAGAAAGAAACGATGAAATCGAGAGACATGTTGAACCTACATCTACTGCAGCCAGCAACTCTTTACAACCAACTTCAGGGGAACAAGAAGCAAGGCAATGA 582 0.4364 MLGSGTNLVTTVIGFGMSATFIVFVCTRIICGRLRGGVESRMMYEIESRIDLERPEHHVNDPDSDPVLLDAIPTLKFNQEAFSSLEHTQCVICLADYKEREVLRIMPKCGHTFHLSCIDIWLRKQSTCPVCRLPLKNSSETKHVRPVTFTMSQSLDESHTSERNDEIERHVEPTSTAASNSLQPTSGEQEARQ* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g2178 193 MobiDBLite consensus disorder prediction 173 193 - -
Gso9g2178 193 MobiDBLite consensus disorder prediction 150 193 - -
Gso9g2178 193 SMART ring_2 90 131 IPR001841 -
Gso9g2178 193 ProSiteProfiles Zinc finger RING-type profile. 90 132 IPR001841 -
Gso9g2178 193 MobiDBLite consensus disorder prediction 158 172 - -
Gso9g2178 193 CDD RING-H2_EL5_like 89 132 - -
Gso9g2178 193 Pfam Ring finger domain 89 132 IPR001841 -
Gso9g2178 193 PANTHER OS02G0676500 PROTEIN 1 183 - -
Gso9g2178 193 SUPERFAMILY RING/U-box 80 139 - -
Gso9g2178 193 PANTHER OS11G0150450 PROTEIN 1 183 - -
Gso9g2178 193 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 142 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g2178 Gso-Chr9 46060635 46062943 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g2178 79 182 C3H Transcription Factor Family AT4G10160 38.679 5.58e-19 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g2178 - - gmx:100780922 394.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g2011 18 52693919 52696318 Gso9g2178 9 46060635 46062943 GST