Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g2175 ATGGGGGTTGGTGGTAATTTCTGGGACCTGCTGAAGCCCTATGCGCGCAAGGAGGGTTTTGATTTCTTGAGGAACAAGCGAGTTGCAGTGGACCTTTCGTTCTGGATTGTTCAGCCCGAGAATGCCATCAAGGCCATGCATGTCAGAAAACCCCATCTCAGGCTTACCTTCTTCCGCACCATCAGTCTCTTCTGCAAGTTTGGAGCACTTCCGGTGTTCATTGTTGATGGGAGTCCATCGCTGTTGAAATCACGTGCCAGGATTGCGAGATATTTCCGGTGTTCTGGCATTGAATTGGCTAACTTGCCGGTGCCTGAAGAAGGTGTTTCAGCTGAGAGGAACCGCTTGTTTTCAAGTCATGTTCAAGAATGTGCGGAACTGGTTGAACTACTTGGAATGCCTGTGCTAAAGGCTAAAGGAGAGGCTGAAGCACTCTGTGCTCAATTAAATAGTGAAGGTCATGTAGATGCTTGCATCACAGCTGACAGTGATGCATTCCTCTTTGGGGCCAAATGCATTATAAAATGTTTCTGTCCCAACTCCAAAGAACCATTTGAATGCTACAATATGTCAGATATTGAAGCCGGGCTTGGATTGAAGAGGAAACACTTAATAGCTATCTCTCTTTTGGTTGGAGATGATCATGATATAAATGGTGTTCGAGGGATTGGGCTTGATACTGCACTTCATTTTGTTAAAGCTTTTAGTGAAGATGATATATTGAATAGATTACATGAGATCGGCAAAGGGAATACTTCACAAATTCCCATCTGCATTAAAGTTGAGGACAATGTGGATGGGAACTCCCCAAATAGAAAACTATCTCATTGTTCATTCTGTGGGCATCCAGGCAGCAAAAAAGATCATATGAAATTTCCCTGTGAATATTGTGTCACAAAGGATGATGAAGGTTGCCAGAGAAAACCAGAGGATTTTAAATGTGATTGCTTCTCCTGTGATATGAATAGGAAACATAAGGAGAAAAAAAGACTAGAAAATCAGCATACAATTTTTTTTCACAAGATTGCAGAGGAGCCAAACTTTCCCAAGGATGAAATCATTGATATGTATTTATGCAATGACAATGGTTATTTTTCAGCAAGTGATAGCCCACACATTGTATGGGGAAACCCCAATATTGAGATGCTGATTAATTTTTTAAACTTCCATCAGCATTGGGAACCAGCCTACGTTCGACGGATGATGTTTCCTATGATGTCCACCATCTTTTTGAGAGATATGACAACAACTACAGTAGAGACTACGTTGTTTGGGCAATATGAGTTTGATTCCGTAGAACGTGTCAAAATGAGATATGGATATCAATTTTTTGTGGTCAAATGGAAACGTGCAGGGGTTAACATTTCCTGTAAAGTTCCATTGAAGGAATCAAGTGTGCAACAGGATGATGCTATAGAGCTTGATGAAATGGTGGATCTACTGGATGACTTTGATGCTCCAGAGATTCATGGAGACGATGGATGCAGTTTTCTGCTTACAGATGAAAATATGGACCTTGTAGGTGCTGCTTTTCCAGCAGAAGTCAAAAGGTTTTGGCAAGAGCAGGAACTGAAAAGAATAAAGAACTCAACATCAAGATCTCAAGAAAATGAAAAATCATCATCACCAAACTCAAGAAGTATTCAGCTAAACATTACAGAGTTCTACCCATCAACGAAAGTTAAACATCGTCAATCAAAACAAGGAGAAGAGTCATCCAAGAATGCTGATAGTCAAGGCAATGGGGGCTCAAAAATGAAAAGGAAAATGTCAAGTCCTGATAAGATTCCAAAATCCGCGAGGCGCCGCCTTTTGTTTGATTAG 1824 0.4106 MGVGGNFWDLLKPYARKEGFDFLRNKRVAVDLSFWIVQPENAIKAMHVRKPHLRLTFFRTISLFCKFGALPVFIVDGSPSLLKSRARIARYFRCSGIELANLPVPEEGVSAERNRLFSSHVQECAELVELLGMPVLKAKGEAEALCAQLNSEGHVDACITADSDAFLFGAKCIIKCFCPNSKEPFECYNMSDIEAGLGLKRKHLIAISLLVGDDHDINGVRGIGLDTALHFVKAFSEDDILNRLHEIGKGNTSQIPICIKVEDNVDGNSPNRKLSHCSFCGHPGSKKDHMKFPCEYCVTKDDEGCQRKPEDFKCDCFSCDMNRKHKEKKRLENQHTIFFHKIAEEPNFPKDEIIDMYLCNDNGYFSASDSPHIVWGNPNIEMLINFLNFHQHWEPAYVRRMMFPMMSTIFLRDMTTTTVETTLFGQYEFDSVERVKMRYGYQFFVVKWKRAGVNISCKVPLKESSVQQDDAIELDEMVDLLDDFDAPEIHGDDGCSFLLTDENMDLVGAAFPAEVKRFWQEQELKRIKNSTSRSQENEKSSSPNSRSIQLNITEFYPSTKVKHRQSKQGEESSKNADSQGNGGSKMKRKMSSPDKIPKSARRRLLFD* 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g2175 607 SMART xpgn3 1 97 IPR006085 GO:0004518
Gso9g2175 607 MobiDBLite consensus disorder prediction 572 586 - -
Gso9g2175 607 CDD PIN_GEN1 2 203 - -
Gso9g2175 607 SUPERFAMILY PIN domain-like 6 214 IPR029060 -
Gso9g2175 607 MobiDBLite consensus disorder prediction 588 607 - -
Gso9g2175 607 Gene3D - 199 261 - -
Gso9g2175 607 PANTHER FLAP ENDONUCLEASE GEN-LIKE 1 1 594 - -
Gso9g2175 607 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 594 IPR006084 -
Gso9g2175 607 Pfam XPG I-region 132 214 IPR006086 GO:0004518
Gso9g2175 607 SMART xpgineu 129 199 IPR006086 GO:0004518
Gso9g2175 607 Gene3D - 3 198 - -
Gso9g2175 607 MobiDBLite consensus disorder prediction 534 559 - -
Gso9g2175 607 SMART HhH_4 201 235 IPR008918 GO:0003677|GO:0003824
Gso9g2175 607 MobiDBLite consensus disorder prediction 527 607 - -
Gso9g2175 607 Pfam XPG N-terminal domain 1 87 IPR006085 GO:0004518
Gso9g2175 607 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 25 39 IPR006084 -
Gso9g2175 607 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 71 90 IPR006084 -
Gso9g2175 607 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 128 145 IPR006084 -
Gso9g2175 607 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 149 169 IPR006084 -
Gso9g2175 607 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 204 219 IPR006084 -
Gso9g2175 607 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 199 413 IPR036279 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g2175 Gso-Chr9 46041091 46045745 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g2175 16 246 Core DNA Replication Machinery Family AT5G26680 29.084 4.12e-17 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g2175 K15338 - gmx:100779848 1249.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g2008 18 52672028 52676716 Gso9g2175 9 46041091 46045745 GST