Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g2156 ATGTCATTCACAGGAACTACAGATAAATGCAAGGCTTGTGATAAGACTGTTTATGTGGTTGACATGTTAACTCTTGAAGGAATCTGGCAATTTCAGCAAGAACTTTCAAACAGGTACAAATTATTATGCACCTGTCACTTTCTATTGACTTGGCTAACATGTTATGTTGTTTTTCATGAACAAAATTGCGGCACAGCAAAGTCTTCTGATAAACAAAATGAGACGCATAAGACCCCCAACAGACTCTCATCCATGTTCAGTGGAACTCTAGACAAATGCTCAGTTTGTTCAAAAACAGTCTATCCTCTGGAAAAGATGACACTTGAAGGGGAATGCTATCACAAGAATTGCTTCAGATGTGCTCATGCAGGTTGCCACCTCACACATTCCTCCTATGCTGCCCTGGATGGTGTCCTCTACTGCAGGCATCATTTCCAACAACTTTTCATGGAGAAAGGGAACTACCATCATGTACTCCAATCTGCTAACCACAAGAAGAATGCCACACAATCTCCTGATGAACCTGCTGAACCTGCAGCTGAAGGAGAAGAAGAGCCTCCAAAGCCAGAAGAATCTGATTCTGAGAAACACACAGAAGAAAAGCCTCAAAATGAAGCATAG 621 0.4171 MSFTGTTDKCKACDKTVYVVDMLTLEGIWQFQQELSNRYKLLCTCHFLLTWLTCYVVFHEQNCGTAKSSDKQNETHKTPNRLSSMFSGTLDKCSVCSKTVYPLEKMTLEGECYHKNCFRCAHAGCHLTHSSYAALDGVLYCRHHFQQLFMEKGNYHHVLQSANHKKNATQSPDEPAEPAAEGEEEPPKPEESDSEKHTEEKPQNEA* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g2156 206 MobiDBLite consensus disorder prediction 162 206 - -
Gso9g2156 206 Pfam LIM domain 93 148 IPR001781 -
Gso9g2156 206 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 193 - -
Gso9g2156 206 SMART lim_4 92 144 IPR001781 -
Gso9g2156 206 ProSiteProfiles LIM domain profile. 91 151 IPR001781 -
Gso9g2156 206 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 119 158 - -
Gso9g2156 206 Gene3D Cysteine Rich Protein 89 157 - -
Gso9g2156 206 PANTHER OS06G0237300 PROTEIN 1 193 IPR045268 GO:0051015
Gso9g2156 206 MobiDBLite consensus disorder prediction 181 206 - -
Gso9g2156 206 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 85 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g2156 Gso-Chr9 45848959 45850886 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gso9g2156 LIM 1.1e-09 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g2156 - - gmx:100788569 314.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1986 18 52463060 52465584 Gso9g2156 9 45848959 45850886 GST
Gso9g2156 9 45848959 45850886 Gso7g0643 7 6844327 6847049 PCT
Gso9g2156 9 45848959 45850886 Gso3g0114 3 1379549 1382035 PCT
Gso7g0643 7 6844327 6847049 Gso9g2156 9 45848959 45850886 PCT
Gso3g0114 3 1379549 1382035 Gso9g2156 9 45848959 45850886 PCT