Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g2154 ATGGGAAGGACACCATGTTGTGACAAGAAGGGTTTGAAGAAAGGGCCTTGGACAGCTGAAGAGGATGAAATTCTTTCTAGTTATATCAAGAAAAATGGTGGTCATGGAAGCTGGCGTTCTCTTCCAAGGATGGCAGGTCTTCTTCGTTGTGGCAAGAGTTGCAGGCTTAGGTGGACAAATTATCTCAGACCAGACATTAAGCGTGGTCCCTTTACTCTTGAGGAAGAAAAACTAGTCATACAGCTTCATGGCATCCTAGGAAATAGGTGGGCTGCAATAGCCTCTCAATTACCAGGGAGAACAGACAATGAGATAAAGAACTTATGGAATACTCACTTGAAGAAGCGTCTCAAAAGAATGGGTCTTGATCCCAAAACCCACGAGCCATTGGCCTCATCGACTTACCCTTTTCACAAGGCACCTGCATCAATCTCCACACGCCACATGGCTCAGTGGGAGAGTGCCAGACTCGAAGCCGAGGCCAGGCTCTCGAACGAGTCATCAAGGTTCAGCCACAACAACAATACCAATCCTAATTCAGATAACAATAAAACCACTGATTCTGACTACTTTCTCCGCATTTGGAACTCTGAAGTTGGAGAGGCATTTCGCAATGTTCATCATCACAAAGCTGATAATGACAACAACAAAATCATTACTACTAATACTCCTACTAGTTCCTGCCACAGTCCTCTTTCTGCAGGATCATCTTCCAACAAGTGTGAGTCAATTGCAACAAATGCAGACTTGGCTTCTAATGAACAAGAAATTATCACACCCTCTAGCATTGTCAAACAAGAGTTTGAGTGGGGGACTCGTGGATCCGACTCCTCAAGCTCTAATGACATGGAAGATTCATCAGACACTGCTTTGCAGCTCTTGTTGGATTTCCCTATAAACAATGACATGAGCTTCTTGGAAGGAAACTCTTTTATGTGTCCACTTTAG 948 0.4409 MGRTPCCDKKGLKKGPWTAEEDEILSSYIKKNGGHGSWRSLPRMAGLLRCGKSCRLRWTNYLRPDIKRGPFTLEEEKLVIQLHGILGNRWAAIASQLPGRTDNEIKNLWNTHLKKRLKRMGLDPKTHEPLASSTYPFHKAPASISTRHMAQWESARLEAEARLSNESSRFSHNNNTNPNSDNNKTTDSDYFLRIWNSEVGEAFRNVHHHKADNDNNKIITTNTPTSSCHSPLSAGSSSNKCESIATNADLASNEQEIITPSSIVKQEFEWGTRGSDSSSSNDMEDSSDTALQLLLDFPINNDMSFLEGNSFMCPL* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g2154 315 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 309 - -
Gso9g2154 315 Gene3D - 69 134 - -
Gso9g2154 315 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Gso9g2154 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Gso9g2154 315 MobiDBLite consensus disorder prediction 163 186 - -
Gso9g2154 315 SMART sant 67 115 IPR001005 -
Gso9g2154 315 SMART sant 13 64 IPR001005 -
Gso9g2154 315 MobiDBLite consensus disorder prediction 166 186 - -
Gso9g2154 315 CDD SANT 16 62 IPR001005 -
Gso9g2154 315 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Gso9g2154 315 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Gso9g2154 315 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Gso9g2154 315 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Gso9g2154 315 PANTHER PROTEIN ODORANT1-LIKE 1 309 - -
Gso9g2154 315 MobiDBLite consensus disorder prediction 268 287 - -
Gso9g2154 315 CDD SANT 70 113 IPR001005 -
Gso9g2154 315 Gene3D - 11 68 - -
Gso9g2154 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g2154 Gso-Chr9 45833115 45836193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g2154 1 309 MYB Transcription Factor Family AT3G61250 63.259 4.92e-122 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso9g2154 Myb_DNA-binding 1.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g2154 K09422 - gmx:100816569 615.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1984 18 52446357 52449454 Gso9g2154 9 45833115 45836193 GST
Gso9g2154 9 45833115 45836193 Gso7g0637 7 6790166 6792383 PCT
Gso9g2154 9 45833115 45836193 Gso3g0110 3 1329749 1332986 PCT
Gso7g0637 7 6790166 6792383 Gso9g2154 9 45833115 45836193 PCT
Gso3g0110 3 1329749 1332986 Gso9g2154 9 45833115 45836193 PCT