Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g2153 ATGATACCTGAGAAATTCCCAATTTCCCCGTTAGATTTTGTTAGTTTAGGCCCCAATCACAACCCCATTTTGAGAATTTTTCGTTCGCAAAGTAAGATCGGAGGGATGAAGAATAGAGATAGAGAGAAGAGCCCACCTAGGATGGGTTTAGGGCGAGGGTTGAACTCGAATCGTGGGTTTCAACCAAGGCCACAACAATATGTGCAGAGGCATATGGTTCAACATCGACATCATCTGCAACCATATCAACATAACCATCACCACCACCACCATCAGCAGCAACGACAACAACATCATCATCATCAACAACAACGACAATGGTTGAGAAAGGACCAGTTAAGTGGTGGGACCAACACCAATGTTGTTGAGGAGGTTGAGAAGACTATGCAGTCTGAAGCCATTAACTCAAGTTCACAAGATTGGAAGGCAAGACTAAATATTCCACCACCTGATACATGCCATAAGACAGAGGATGTGACAGCAACTAAAGGAAATGAATTTGAGGATTACTTTTTGAAGCGCGAGTTGCTAATGGGAATATATGAGAAGGGTTTTGAAAGGCCTTCTCCTATCCAAGAAGAATGCATTCCGATTGCTCTTACTGGTAGTGACATTCTTGCTAGGGCTAAAAATGGAACAGGCAAAACAGCTGCCTTTTGTATTCCTGCATTGGAAAAAATTGATCAGGATAATGATGTTATTCAAGTTGCAATATTGGTACCAACACGAGAACTGGCTTTGCAAACATCTCAAGTGTGTAAAGATCTCGGAAAACATTTGAAAATTCAAGTTATGGTTACAACAGGTGGTACCAGCCTGAAGGATGATATCATGCGCTTATATCAACCAGTTCATCTGCTAGTTGGAACTCCGGGAAGAATATTAGATCTTGCAAAGAAGGGTGTTTGCATTCTGAATGATTGCTCTATGCTTGTTATGGATGAGGCTGATAAGCTTCTCTCCCAAGAGTTCCAACCTTCAATAGAGCAGCTGATTCAATTTCTTCCTGGAAACCGTCAAATCCTGATGTTTTCTGCTACATTTCCTGTTACTGTCAAGGACTTCAAAGATCGATATCTTCGTAAGCCATACATCGTTAACCTTATGGATGAGCTAACTCTGAAAGGTATTACACAATATTACGCATTTCTGGAAGAGAGGCAGAAAGTCCACTGCCTAAATACACTTTTCTCTAAGCTGCAAATAAATCAGTCGATCATCTTCTGCAATTCCGTGAATCGGGTTGAGCTACTCGCCAAGAAAATCACAGAACTTGGGTATTCATGTTTCTATATTCATGCAAAGATGTTGCAAGATCACCGAAATAGAGTGTTTCATGACTTCTGCAATGGTGCCTGCAGAAACCTTGTTTGTACTGATCTTTTCACTAGGGGAATAGACATCCAAGCAGTCAATGTTGTTATTAATTTTGATTTTCCAAAGAACTCAGAAACTTATCTGCACAGGGTTGGTCGTTCAGGGAGGTTTGGACACCTAGGTTTAGCGGTGAACTTGATCACCTATGAGGATCGCTTCAATTTATATAGGATTGAACAAGAACTTGGCACTGAAATAAAACAAATTCCACCACACATTGATCAGGCAATATATTGCCGGTAA 1620 0.4086 MIPEKFPISPLDFVSLGPNHNPILRIFRSQSKIGGMKNRDREKSPPRMGLGRGLNSNRGFQPRPQQYVQRHMVQHRHHLQPYQHNHHHHHHQQQRQQHHHHQQQRQWLRKDQLSGGTNTNVVEEVEKTMQSEAINSSSQDWKARLNIPPPDTCHKTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEECIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNDVIQVAILVPTRELALQTSQVCKDLGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCILNDCSMLVMDEADKLLSQEFQPSIEQLIQFLPGNRQILMFSATFPVTVKDFKDRYLRKPYIVNLMDELTLKGITQYYAFLEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFCNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCR* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g2153 539 MobiDBLite consensus disorder prediction 129 143 - -
Gso9g2153 539 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 53 539 - -
Gso9g2153 539 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 12 53 539 - -
Gso9g2153 539 SMART ultradead3 184 380 IPR014001 -
Gso9g2153 539 MobiDBLite consensus disorder prediction 82 105 - -
Gso9g2153 539 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 196 366 IPR014001 -
Gso9g2153 539 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 235 519 IPR027417 -
Gso9g2153 539 SMART helicmild6 416 497 IPR001650 -
Gso9g2153 539 Pfam Helicase conserved C-terminal domain 391 497 IPR001650 -
Gso9g2153 539 MobiDBLite consensus disorder prediction 82 117 - -
Gso9g2153 539 CDD DEADc_DDX6 167 367 - -
Gso9g2153 539 MobiDBLite consensus disorder prediction 129 154 - -
Gso9g2153 539 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 376 536 IPR001650 -
Gso9g2153 539 MobiDBLite consensus disorder prediction 34 62 - -
Gso9g2153 539 CDD SF2_C_DEAD 377 506 - -
Gso9g2153 539 Pfam DEAD/DEAH box helicase 190 354 IPR011545 GO:0003676|GO:0005524
Gso9g2153 539 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 165 193 IPR014014 GO:0003724
Gso9g2153 539 Gene3D - 370 539 IPR027417 -
Gso9g2153 539 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 312 320 IPR000629 -
Gso9g2153 539 Gene3D - 120 369 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g2153 Gso-Chr9 45817572 45829254 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g2153 165 536 Eukaryotic Initiation Factors Gene Family AT3G19760 37.433 2.09e-90 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g2153 K12614 - gmx:100788032 1034.25