Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g2147 ATGGATCGTGGGGACCAAATGGCGTTATCCGGGTCTTACTATATGCAGCAAAGAGGAATACCTGGATCTGGAGGACAACCTGAGTTACATATTTCACCTAATATGCGTCCACTGTCTAATCCAAATCTACCATTTCAATCCAGCATTGGTGGTGGTACCATTGGATCCACATTGCCATTGGAATCTTCAGCAATTTCGGCCCATGGTGTCAATGTGGGAGCTCCTACTGGGGCACCTCTAGGGGAACCTGTCAAAAGGAAGAGAGGAAGGCCTAGGAAATATGGTACCGATGGAAGTGTGTCATTGGCATTGACTCCAACTCCAACATCATCTAGCCATCCTGGAGCCTTGTCACAAAGCCAGAAACGGGGCAGAGGGCGCCCCCCGGGGACTGGGAAAAAACAGCAATTGGCTTCTCTTGGTGAATTGATGTCTGGTTCAGCTGGGATGGGATTCACTCCTCATATCATCAACATTGCAAGTGGAGAAGACATTGCAACAAAAATCATGGCATTTTCTCAGCAGGGACCTAGAGTTGTATGCATTTTGTCAGCCAATGGTGCTGTCTCTACTGTCACACTTCGTCAGCCATCAACTTCAGGCGGCACTGTCACATACGAGGGGCGCTTCGAGATAGTGTGTCTGTCAGGCTCTTACTTGGTCACTGAAAATGGTGGCTCACGCAATCGAACTGGTGGATTGAGTGTGTCCCTTGCTAGTCCTGATGGTCGTGTCATTGGCGGCGGAGTTGGTGGAGTGCTTATTGCATCAAGCCCTGTTCAGGTGGTAGTTGGGAGCTTTCTATGGGGAGGATCAAAGACAAAGAACAAGAAAAAGGAATCCTCAGAAGGTGCAGAAGTTGCTGTGGAGTCAGATCATCAGGGAGTTCATAATCCAGTTTCACTGAATAGCATCTCACAAAATCAAAACCTTCCTCCAACTCCCCCATCTCTAAGTCCTTGGTCAACATCACGTCCGTTGGACATGCGTAATTCCCATGTGGACATTGATTTAATGCGTGGGTGA 1026 0.4834 MDRGDQMALSGSYYMQQRGIPGSGGQPELHISPNMRPLSNPNLPFQSSIGGGTIGSTLPLESSAISAHGVNVGAPTGAPLGEPVKRKRGRPRKYGTDGSVSLALTPTPTSSSHPGALSQSQKRGRGRPPGTGKKQQLASLGELMSGSAGMGFTPHIINIASGEDIATKIMAFSQQGPRVVCILSANGAVSTVTLRQPSTSGGTVTYEGRFEIVCLSGSYLVTENGGSRNRTGGLSVSLASPDGRVIGGGVGGVLIASSPVQVVVGSFLWGGSKTKNKKKESSEGAEVAVESDHQGVHNPVSLNSISQNQNLPPTPPSLSPWSTSRPLDMRNSHVDIDLMRG* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g2147 341 CDD DUF296 153 267 IPR005175 -
Gso9g2147 341 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 31 309 IPR039605 GO:0003680
Gso9g2147 341 MobiDBLite consensus disorder prediction 100 119 - -
Gso9g2147 341 Pfam Plants and Prokaryotes Conserved (PCC) domain 154 267 IPR005175 -
Gso9g2147 341 SMART AT_hook_2 85 97 IPR017956 GO:0003677
Gso9g2147 341 SMART AT_hook_2 122 134 IPR017956 GO:0003677
Gso9g2147 341 MobiDBLite consensus disorder prediction 71 136 - -
Gso9g2147 341 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 31 309 - -
Gso9g2147 341 ProSiteProfiles PPC domain profile profile. 148 290 IPR005175 -
Gso9g2147 341 SUPERFAMILY AF0104/ALDC/Ptd012-like 152 269 - -
Gso9g2147 341 MobiDBLite consensus disorder prediction 273 287 - -
Gso9g2147 341 MobiDBLite consensus disorder prediction 273 341 - -
Gso9g2147 341 Gene3D - 154 296 - -
Gso9g2147 341 MobiDBLite consensus disorder prediction 296 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g2147 Gso-Chr9 45762665 45769694 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g2147 1 341 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 49.311 1.75e-86 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g2147 - - gmx:100814615 610.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1979 18 52396212 52404162 Gso9g2147 9 45762665 45769694 GST
Gso9g2147 9 45762665 45769694 Gso7g0630 7 6700374 6706926 PCT
Gso9g2147 9 45762665 45769694 Gso3g0096 3 1061294 1068986 PCT
Gso7g0630 7 6700374 6706926 Gso9g2147 9 45762665 45769694 PCT
Gso3g0096 3 1061294 1068986 Gso9g2147 9 45762665 45769694 PCT