Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g2121 ATGGGAGGTTGCTGTTGTTCTGCCAGAAAACCTCATCTGCAAGGGGCACCAGTATATTACTATTGCCCACCAACTTTTGAAGAGCGTGAGTCTTTAACATCTAATAATGGCACGAATGCTTCAGTCAATGCTGGATTTCTCATTGGTTTGAACCTGGAAGCATCCATGCCTGATACTTTCCAGTCCCCTCCCGTGCCTCTACCTTATGATATGGTCTTGGGAGGTTCTGCATCAACATATTCTGAATCTGGCAGAGAAACAGTTAGTAGTTTTGAAACTTTAATTACACGTGAAGATGTTGAAGAATCAGATTGTAAAGCTCAAGCCAATTCTGCTCTTACATCGCCAAGGAAGGCACAACTACCAAAATCAAATGTAACTCAAGTATTAGTGACAGAAGAAGAGGATGTCTGTCCAATTTGTCTTGAAGAATATGATGTTGAAAATCCTAGTAATTTGACAAAATGTGAACACCATTTTCACTTATCATGCATTCTTGAGTGGATGGAACGAAGTGACTCCTGTCCTATTTGTGATCAGGAGATGATATTTTGA 555 0.4018 MGGCCCSARKPHLQGAPVYYYCPPTFEERESLTSNNGTNASVNAGFLIGLNLEASMPDTFQSPPVPLPYDMVLGGSASTYSESGRETVSSFETLITREDVEESDCKAQANSALTSPRKAQLPKSNVTQVLVTEEEDVCPICLEEYDVENPSNLTKCEHHFHLSCILEWMERSDSCPICDQEMIF* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g2121 184 ProSiteProfiles Zinc finger RING-type profile. 138 179 IPR001841 -
Gso9g2121 184 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 184 - -
Gso9g2121 184 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHB1A-RELATED 1 184 - -
Gso9g2121 184 SUPERFAMILY RING/U-box 131 182 - -
Gso9g2121 184 SMART ring_2 138 178 IPR001841 -
Gso9g2121 184 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 183 IPR013083 -
Gso9g2121 184 Pfam Ring finger domain 137 178 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g2121 Gso-Chr9 45494404 45498157 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g2121 1 184 C3H Transcription Factor Family AT4G00335 57.527 2.06e-73 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g2121 - - gmx:100803758 386.726
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1952 18 52023349 52027209 Gso9g2121 9 45494404 45498157 GST
Gso9g2121 9 45494404 45498157 Gso7g0600 7 6359241 6363624 PCT
Gso9g2121 9 45494404 45498157 Gso16g0284 16 3219121 3223552 PCT
Gso7g0600 7 6359241 6363624 Gso9g2121 9 45494404 45498157 PCT
Gso16g0284 16 3219121 3223552 Gso9g2121 9 45494404 45498157 PCT