Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g2118 ATGGGTTTTCCCGTAGGGTACCCGGAGCTCCTGGTTCCGAAAATGTTCCTCCACGCGCTTTCCTTCCTCGCGTGGCTCCGCTCCCTCGTTTTCGCCCTCTTCCGCCTCCTCCGCATCTCCGACCTCCTCGACACTGAACCTTCCCCCTCCGACCTCCCTCCGCCGGCTCCGCCGCGCGAGCCGACGCTATCCGCACTTCTCATCCGAGAGTTTCTCCCCGTGGCCGCCTTCCGCGACCTCGCCAGCGCCTCCGGAGTAGATCCTCCTCCGTCGGGATGCGCCGTGTGCCTGAGCGAGTTTTCCGAAGAAGAGGAAATCCGGTGCATGGCGAACTGCAAGCACATTTTCCACTGCGCGTGCGTGGACCGTTGGATCGATCACGATCAGAAGACGTGTCCGCTGTGCAGAAGTACGTTGGTGCCACATCAGAAGCTCGAAGAATACAACCAGCGACTATGGGCGGCTTCTGGAGTTTCGCAGTTTTATTACCAAGACGATTACACGGCTTCCCTCTGA 516 0.6008 MGFPVGYPELLVPKMFLHALSFLAWLRSLVFALFRLLRISDLLDTEPSPSDLPPPAPPREPTLSALLIREFLPVAAFRDLASASGVDPPPSGCAVCLSEFSEEEEIRCMANCKHIFHCACVDRWIDHDQKTCPLCRSTLVPHQKLEEYNQRLWAASGVSQFYYQDDYTASL* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g2118 171 Pfam Ring finger domain 93 136 IPR001841 -
Gso9g2118 171 SUPERFAMILY RING/U-box 86 145 - -
Gso9g2118 171 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 169 - -
Gso9g2118 171 ProSiteProfiles Zinc finger RING-type profile. 93 136 IPR001841 -
Gso9g2118 171 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 1 169 - -
Gso9g2118 171 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 141 IPR013083 -
Gso9g2118 171 SMART ring_2 93 135 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g2118 Gso-Chr9 45472893 45473695 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g2118 1 157 C3H Transcription Factor Family AT1G63840 44.654 5.65e-45 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g2118 K16281 - gmx:100803226 323.553
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1949 18 51998363 51999171 Gso9g2118 9 45472893 45473695 GST
Gso9g2118 9 45472893 45473695 Gso7g0591 7 6266251 6267042 PCT
Gso9g2118 9 45472893 45473695 Gso16g0279 16 3147852 3148576 PCT
Gso7g0591 7 6266251 6267042 Gso9g2118 9 45472893 45473695 PCT
Gso16g0279 16 3147852 3148576 Gso9g2118 9 45472893 45473695 PCT