Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g2112 ATGCACGTGCAACTCAGGCGAGCCAGGAGAAGAACTGATACGCAGGACATAGAACTTGCAATGGATATGATGGTGGTGTTCTCTGATGATGATGACAGAAATGCTGATAGTGCTATCATTGAGAGGTTGGCTAAAAAATTGGAGCTTCATAGTGTTGAGGATCTCAATATAGAAACATTGGCTATTAGGAACCTTGCTGCAGAAAGAAAAGGGCAACAGACTGAGAGTACTCAGAAAATAATTGACCTTCTCAACAAATTCAAACGAATTGCAGGCATGGAAGAAACCAGCGTCCTTGATGATCCTGTCGTGTCCAAGATGCTTGAGAGGTGCACCTCTTTGGTCATCCCTCATGAGTTTCTCTGCCCAATTACACTAGAAATCATGACAGATCCTGTTATTGTAACAAGTGGGCAGACATATGAAAGGGAAAGCATAGAGAAGTGGTTCCAATCCAACCATAACACATGCCCCAAGACAAGGCAACCTTTGGAACACTTGTCATTGGCACCAAACTGTGCCTTGAAAAGCTTGATTGAAGAATGGTGTGAGAACAACAACTTCAAACTCCCTAAAAAATACAATTCTTCAGGTAAAGAAAGCTGTCCTATAGACAGCAAAGAGGAAATTCCAGCCTTGGTTGAGAGCCTATCATCTATTCATTTAGAAGAGCAGAGAAAAGCAGTGGAGAAGATACGTATGCTATCAAAGGAAAATCCTGAGAACAGGGTTTTGGTTGCTGATCATGGAGGAATACCACCACTAGTGCAACTCTTGTCATATCCAGATTCAAAAATACAAGAACATGCTGTGACAGCACTTTTAAATTTATCAATTGATGAGGGTAACAAGAGTCTTATATCCACAGAAGGTGCCATTCCAGCTATCATAGAAGTGTTGGAGAATGGGAGTTGTGTGGCTAAGGAGAACTCAGCAGCAGCTTTATTCAGCTTGTCAATGCTTGATGAGATTAAAGAGATTGTTGGTCAATCAAATGGATTCCCCCCTTTGGTGGATTTGTTGAGGAATGGAACAATTAGAGGGAAGAAAGATGCTGTTACAGCCCTTTTTAACTTATGTATCAACCATGCAAATAAAGGTAGGGCCATTAGAGCTGGCATTGTGACACCTTTGCTTCAATTGCTCAAGGACACAAACTTAGGCATGATTGATGAGGCACTCTCCATTTTGTTACTCCTTGTATCAAATTCAGAAGCAAGACAAGAGATTGGACAACTTAGTTTCATCGAAACCCTTGTTGACTTCATGAGAGAAGGGAGTCCAAAGAACAAGGAATGTGCAGCATCTGTTCTTCTTGAGTTGTGCTCAAGTAATTCATCCTTTACATTGGCAGCACTTCAGTTTGGAGTGTATGAGTATTTAATGGAGATAAAACAAAATGGAACAAATAGAGCACAGAGGAAAGCAATTGCAATCTTAGATCTCATTAGCAGGAGCGAGCAAATTTAA 1470 0.4088 MHVQLRRARRRTDTQDIELAMDMMVVFSDDDDRNADSAIIERLAKKLELHSVEDLNIETLAIRNLAAERKGQQTESTQKIIDLLNKFKRIAGMEETSVLDDPVVSKMLERCTSLVIPHEFLCPITLEIMTDPVIVTSGQTYERESIEKWFQSNHNTCPKTRQPLEHLSLAPNCALKSLIEEWCENNNFKLPKKYNSSGKESCPIDSKEEIPALVESLSSIHLEEQRKAVEKIRMLSKENPENRVLVADHGGIPPLVQLLSYPDSKIQEHAVTALLNLSIDEGNKSLISTEGAIPAIIEVLENGSCVAKENSAAALFSLSMLDEIKEIVGQSNGFPPLVDLLRNGTIRGKKDAVTALFNLCINHANKGRAIRAGIVTPLLQLLKDTNLGMIDEALSILLLLVSNSEARQEIGQLSFIETLVDFMREGSPKNKECAASVLLELCSSNSSFTLAALQFGVYEYLMEIKQNGTNRAQRKAIAILDLISRSEQI* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g2112 489 SUPERFAMILY ARM repeat 210 484 IPR016024 -
Gso9g2112 489 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 250 292 IPR000225 GO:0005515
Gso9g2112 489 SUPERFAMILY RING/U-box 115 191 - -
Gso9g2112 489 Pfam U-box domain 116 186 IPR003613 GO:0004842|GO:0016567
Gso9g2112 489 ProSiteProfiles U-box domain profile. 115 189 IPR003613 GO:0004842|GO:0016567
Gso9g2112 489 CDD RING-Ubox_PUB 120 162 IPR045210 -
Gso9g2112 489 PANTHER U BOX DOMAIN-CONTAINING 1 487 - -
Gso9g2112 489 Pfam Armadillo/beta-catenin-like repeat 239 278 IPR000225 GO:0005515
Gso9g2112 489 Pfam Armadillo/beta-catenin-like repeat 323 360 IPR000225 GO:0005515
Gso9g2112 489 Gene3D - 196 306 IPR011989 -
Gso9g2112 489 Gene3D - 307 488 IPR011989 -
Gso9g2112 489 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 191 IPR013083 -
Gso9g2112 489 SMART Ubox_2 119 182 IPR003613 GO:0004842|GO:0016567
Gso9g2112 489 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 15 1 487 - -
Gso9g2112 489 SMART arm_5 280 320 IPR000225 GO:0005515
Gso9g2112 489 SMART arm_5 362 402 IPR000225 GO:0005515
Gso9g2112 489 SMART arm_5 321 361 IPR000225 GO:0005515
Gso9g2112 489 SMART arm_5 403 443 IPR000225 GO:0005515
Gso9g2112 489 SMART arm_5 239 279 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g2112 Gso-Chr9 45422511 45424554 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g2112 4 489 U-box Gene Family AT5G42340 69.547 0.0 650
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g2112 - - gmx:100777362 941.799
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1942 18 51915782 51919002 Gso9g2112 9 45422511 45424554 GST