Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g2108 ATGTCAATCTTCGACGGAGCTTTCATGAACACGCAACTCTCCAAGCACACTTCGATCTTCGGCCTCCGTCTCTGGGTCGTGATCGGAATCCTCATTGGAGTCTTCATCGTCTTCACGCTCTTCCTCCTCTCCCTCTGCCTCGTCTCTCGCCGGAACCGCCGCCGCTCCGTCGCCGTCCCCGGCTACAAGGTCACCGGAGACGCCGACGCGGCGAAGGACATCCACACGATCGTGCACCTTCCCGGGCCCCACATGCTCCGGCCGGTGGCGCCGGAGATCCACGTGGAGATGGGGAAGAAGACGGAGCACCGGGTGGTGGTGCAGTGCGATGGGGTTTCGAGCGAGGAGAGTAAGGTGACGGTGGGGAGTGGGTGTGAAACGACGTCGTCTTTTGGAAGTGGGAGTGTTGGTGGGCCTGGGCTTGGGTCTGGGCCTGGGCTTGGGCCTGAGGTTTCACATCTCGGATGGGGGAGATGGTACACTCTGAGGGAGCTTGAGGATGCCACTGGAGGATTGAGCCCTGAAAATGTGGTTGGTGAAGGTGGCTACGGAATTGTCTATCATGGAGTACTCAATGATGGTACCAAAATTGCTGTCAAGAACCTCTTGAATAACAAGGGACAAGCTGAGAAAGAATTTAAAATAGAGGTAGAAGCAATTGGTCGAGTGCGACACAAAAATCTTGTTAGGCTGCTTGGATACTGTGTTGAGGGAGCCTACAGGATGCTTGTGTATGAGTATGTAGACAATGGCAATCTAGAGCAATGGCTGCATGGGGACGTTGGAGCTGTAAGCCCTTTGACATGGAACATACGGATGAACATTATATTGGGAACTGCAAGAGGATTGGCCTATCTTCATGAGGGTCTTGAACCGAAAGTTGTCCACCGAGATGTGAAATCAAGTAACATACTTATTGATCGCCAATGGAACTCCAAGGTTTCCGATTTTGGACTTGCTAAGCTTTTGTGTTCTGAGAATAGTTACGTCACAACTCGAGTGATGGGGACATTTGGTTATGTTGCACCAGAATATGCATGCACTGGAATGCTGACTGAGAAGAGTGATATTTATAGCTTTGGGATACTTATCATGGAGATAATCACCGGAAGAAGTCCTGTTGATTATAGTAGACCGCAAGGAGAGGTTAATTTAATAGAATGGTTGAAGACTATGGTTGGGAATCGAAAATCCGAGGAAGTAGTTGATCCTAAGCTCCCTGAGATGCCATTTTCAAAGGCTCTTAAACGTGCTTTGTTGATTGCTCTTCGGTGTGTTGATCCTGATGCAACAAAGAGGCCAAAAATGGGACATGTGATACACATGCTTGAGGCAGACGACCTGTTATTCCATACTGAACAAAGAACTGAGGGAGAGTCTTCCCGTTCCTATCAAAGTGAGCACAAGGACTCAAATTTAGATAAGAGAACAGGTGGAGGTGTCATTGATAAAAGTGAAGATGCTAGTACTAGATGGAGATGA 1482 0.4912 MSIFDGAFMNTQLSKHTSIFGLRLWVVIGILIGVFIVFTLFLLSLCLVSRRNRRRSVAVPGYKVTGDADAAKDIHTIVHLPGPHMLRPVAPEIHVEMGKKTEHRVVVQCDGVSSEESKVTVGSGCETTSSFGSGSVGGPGLGSGPGLGPEVSHLGWGRWYTLRELEDATGGLSPENVVGEGGYGIVYHGVLNDGTKIAVKNLLNNKGQAEKEFKIEVEAIGRVRHKNLVRLLGYCVEGAYRMLVYEYVDNGNLEQWLHGDVGAVSPLTWNIRMNIILGTARGLAYLHEGLEPKVVHRDVKSSNILIDRQWNSKVSDFGLAKLLCSENSYVTTRVMGTFGYVAPEYACTGMLTEKSDIYSFGILIMEIITGRSPVDYSRPQGEVNLIEWLKTMVGNRKSEEVVDPKLPEMPFSKALKRALLIALRCVDPDATKRPKMGHVIHMLEADDLLFHTEQRTEGESSRSYQSEHKDSNLDKRTGGGVIDKSEDASTRWR* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g2108 493 Gene3D Phosphorylase Kinase; domain 1 156 247 - -
Gso9g2108 493 SUPERFAMILY Protein kinase-like (PK-like) 150 444 IPR011009 -
Gso9g2108 493 ProSitePatterns Protein kinases ATP-binding region signature. 178 200 IPR017441 GO:0005524
Gso9g2108 493 Gene3D Transferase(Phosphotransferase) domain 1 248 460 - -
Gso9g2108 493 PANTHER BRASSINOSTEROID INSENSITIVE 1-ASSOCIATED RECEPTOR KINASE 1 492 - -
Gso9g2108 493 SMART serkin_6 172 450 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso9g2108 493 Pfam Protein kinase domain 175 441 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso9g2108 493 ProSiteProfiles Protein kinase domain profile. 172 449 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso9g2108 493 MobiDBLite consensus disorder prediction 454 493 - -
Gso9g2108 493 PANTHER OS01G0323000 PROTEIN 1 492 - -
Gso9g2108 493 CDD STKc_IRAK 178 444 - -
Gso9g2108 493 ProSitePatterns Serine/Threonine protein kinases active-site signature. 294 306 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g2108 Gso-Chr9 45382260 45386123 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g2108 105 467 Receptor kinase-like Gene Family AT4G02010 40.584 1.08e-91 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Gso9g2108 Pkinase 1.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g2108 - - gmx:100800724 943.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1938 18 51812594 51816414 Gso9g2108 9 45382260 45386123 GST
Gso9g2108 9 45382260 45386123 Gso7g0578 7 6131451 6134789 PCT
Gso9g2108 9 45382260 45386123 Gso16g0266 16 3047437 3051577 PCT
Gso7g0578 7 6131451 6134789 Gso9g2108 9 45382260 45386123 PCT
Gso16g0266 16 3047437 3051577 Gso9g2108 9 45382260 45386123 PCT