Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g2100 ATGGCGGAAGATTGGGATCTACATGCGGTGGTTAGAGGCTGCTCCACCGTTACATCATCGTCGGTGTCTTCCTCATCTTCTTCTTCCTCTGGCTTTGCCTCTTGTTACTTCCACCCTGAAGCTGCTGCTTCTTCTTCTTCCTCTTCCGGCTTCAACATCTTCAAGGGTGAACAAGGAATAAGCCAAGCTTTGTCGCTTTCTGCGTACCCTTTTGAGGCAAGGAGCTCCATTGAGGAGTTGCATGAGCTTTGCAAGCCTTTCTTCTCCAAATCTCAGCCTCTAACGTTGCAGGCCTCTTCACCCTTGTCCTCACTCTCTTCCTATTCCTCTGCTCCACCCAAGTCTGTTTCAACGCAAGAGAAACAACAACAGAGGAGTAAGCAGCCACATGCTGTCACCACCCCACGATCTAAAAGAAGAAAGAACCAGCTTAAGAAAGTTTGTCAAGTACCAGTTGAGAATCTCTCTTCAGACATATGGGCATGGAGGAAATATGGCCAGAAACCCATAAAGGGGTCTCCATATCCAAGGGGGTACTATAGATGTAGCAGCTCAAAGGGGTGTTTGGCAAGGAAACAGGTTGAAAGAAACAGATCAGACCCAACAATGTTCATAGTGACTTACACTGCTGAGCACAACCACCCTGCACCTACTCACAGAAACTCTCTTGCTGGTTCCACACGCCAGAAGCCATTGGCACCTCAAACAGCCACCACCACTGAAGAAGACTCTGAAAAGAGCAAGAGCTTCACAAAACCCACTTCCCCTGCCACCTCAGGGGCAGAGGAAGAGGCTCCAACACCACCACAAGGGGAAAAATCTGAGAGCAGAGAAGAGAAAGAGGATGTGATGGATGACGAGGAAGAAGATGAATTTGGCTTGTCTGATATGGTGCTTTCAGATGACTTCTTTGAAAGTTTGGATGAGCTGAGCCAACTCACTGCTCCTTCTGTTGTCACTGGTGACTGCTTCAGTGACCCCTTTTCTGCAATTGCAATCCCTTCTTGGGTGGCTAGTGGTGCTGCTACTGCTGGTGGATGTAGATGA 1047 0.4852 MAEDWDLHAVVRGCSTVTSSSVSSSSSSSSGFASCYFHPEAAASSSSSSGFNIFKGEQGISQALSLSAYPFEARSSIEELHELCKPFFSKSQPLTLQASSPLSSLSSYSSAPPKSVSTQEKQQQRSKQPHAVTTPRSKRRKNQLKKVCQVPVENLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNRSDPTMFIVTYTAEHNHPAPTHRNSLAGSTRQKPLAPQTATTTEEDSEKSKSFTKPTSPATSGAEEEAPTPPQGEKSESREEKEDVMDDEEEDEFGLSDMVLSDDFFESLDELSQLTAPSVVTGDCFSDPFSAIAIPSWVASGAATAGGCR* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g2100 348 ProSiteProfiles WRKY domain profile. 151 217 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso9g2100 348 MobiDBLite consensus disorder prediction 105 146 - -
Gso9g2100 348 MobiDBLite consensus disorder prediction 211 296 - -
Gso9g2100 348 MobiDBLite consensus disorder prediction 281 296 - -
Gso9g2100 348 SMART WRKY_cls 156 216 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso9g2100 348 Pfam WRKY DNA -binding domain 158 215 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso9g2100 348 MobiDBLite consensus disorder prediction 214 240 - -
Gso9g2100 348 Gene3D WRKY domain 140 210 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso9g2100 348 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 1 338 IPR044810 GO:0003700
Gso9g2100 348 SUPERFAMILY WRKY DNA-binding domain 154 217 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso9g2100 348 MobiDBLite consensus disorder prediction 105 131 - -
Gso9g2100 348 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 1 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g2100 Gso-Chr9 45276056 45278277 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g2100 1 346 WRKY Transcription Factor Family AT4G01250 45.763 4.12e-82 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gso9g2100 WRKY 3.4e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g2100 K13425 - gmx:100798084 626.706
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1927 18 51669229 51671455 Gso9g2100 9 45276056 45278277 GST
Gso9g2100 9 45276056 45278277 Gso16g0260 16 2970159 2972172 PCT
Gso16g0260 16 2970159 2972172 Gso9g2100 9 45276056 45278277 PCT