Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g2088 ATGTCATCTTCTTCCATTCCCTCCTCCCCTGATCACTTCCCCCACCTCGGCCTCGGCTACTCCATCGCCATAGCCCTAGCCTTCCTCTTCCTCCTCTCCACCCTCCTCCTCTCCTCCTACCTCTGCTGCCGCCACAACCGCCGTCGCCTCCGCCACACCACCGCCGCCGCCACCTCCGACGGGGGCATCGTCCTGCCACGTGTCATCTTCGTGGCGGAGGACGAGGACGAGGATGGCAGCGTGGCGGTGGGGTTCGACCAGAGCGTGATAAACTCGTATCCGAGGTTCCAGTTCAACAGGGACAACGCACGGAACAATAATATTATTAACACCACGTGCTCGATATGTTTGTGCGAGTACAAGGATTCGGAGATGCTGAGGATGATGCCGGAGTGTCGCCATTACTTCCACCTATGTTGTCTCGATTCGTGGCTGAAGCTCAATGGCTCTTGCCCCGTTTGCAGAAACTCGCCGCTTCCGACGCCGCTTTCTACGCCGCTGCAGGAGGTGGTGCCGCTCTCTCAGTATGCTGCTGATAGGAGAAGAAATAGGTGA 555 0.582 MSSSSIPSSPDHFPHLGLGYSIAIALAFLFLLSTLLLSSYLCCRHNRRRLRHTTAAATSDGGIVLPRVIFVAEDEDEDGSVAVGFDQSVINSYPRFQFNRDNARNNNIINTTCSICLCEYKDSEMLRMMPECRHYFHLCCLDSWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLSQYAADRRRNR* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g2088 184 PANTHER RING-H2 FINGER PROTEIN ATL67 3 182 IPR044289 GO:0016567|GO:0016740
Gso9g2088 184 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 159 IPR013083 -
Gso9g2088 184 SUPERFAMILY RING/U-box 90 160 - -
Gso9g2088 184 Pfam Ring finger domain 112 155 IPR001841 -
Gso9g2088 184 ProSiteProfiles Zinc finger RING-type profile. 113 155 IPR001841 -
Gso9g2088 184 SMART ring_2 113 154 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g2088 Gso-Chr9 45197749 45198975 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g2088 1 174 C3H Transcription Factor Family AT5G07040 41.954 5.44e-37 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g2088 - - gmx:100793332 297.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1915 18 51571528 51572720 Gso9g2088 9 45197749 45198975 GST
Gso9g2088 9 45197749 45198975 Gso7g0553 7 5605876 5607125 PCT
Gso9g2088 9 45197749 45198975 Gso16g0252 16 2908503 2909661 PCT