Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g2069 ATGGAATTCGATGCCGCGATTCCCGTGTCCCGAGAGCACCTCCCTCCAGATGAAATGTGGCAAATTAACTTGAGGTCAAGTGAAACAATGGAATCAGGACCTTATCCTGAGCATCCCGGAGAACCAGATTGTTCATACTACATTAGGACTGGTCTTTGTAGATTTGGAGCAACATGTCGATTTAATCATCCTCCTAACAGGAAGCTGTTACCTGATAGTTTTTTCTTTGAAAACTATCAGGCTATTGCCGCTGCACGGATGAAAGGTGAATTCCCAGAAAGGATAGGACAGCCAGAATGCCAGTACTATTTGAAGACAGGAACTTGCAAATTTGGAGCCACATGCAGGTTTCATCATCCTAGAGACAAGGCTGGGATTGCTGGAAGAGTTGCCATGAATATTTTAGGCTATCCTCTCCGCCCAAATGAGCCTGAATGTGCTTATTATTTAAGAACTGGACAATGTAAATTTGGGAACACTTGCAAATTTCACCATCCTCAACCAAACAATATGGTGCTTTCCATGAGAAGTTCTCCTGTTTATCCTACTGTCCATTCTCCAACTACACCAGGTCAGCAGTCATACGCGACAGGAATCACAAATTGGTCTAGTTCATCGTATATTCCTAGCCCACGTTGGCAAGGCCCTTCAAGTTATGCACCTTTAATTCTACCTCAGGGAATGGTTTCAGTGCCTGGGTGGAGTGCATACAGTGGTCAAATGGGATCAGACAGTCCTCAGCAAACAATGGGAAATGGCCAAAGCTATGGAACTTCTCGGCAAAGTGAACCAGCAAATTCAGGATCCCAGGGGGCATATTCTCAATTTCGTTCTGGCTCTGTTCCTGTAGGGTTCTATGCGTTGCAGAGGGAGAACATATTTCCTGAGAGACCTGATCAACCTGAATGTCAATTCTACATGAAGACTGGAGATTGCAAGTTTGGTGCAGTCTGTCGTTTCCATCATCCACGTGAAAGGATGATTCCTGCTCCTGACTGTGTTTTGAGTCCTATAGGTCTTCCTTTACGTCCTGGAGAGCCCCTGTGTGTGTTCTATTCACGTTACGGCATATGCAAATTTGGTCCAAGTTGCAAGTTTGATCACCCAATGGGAGTCTTCACCTATAACATATCTGCATCACCTTCAGCTGATGCCCCAGGACGGCGTATGTTAGGTTCTTCATCGGGAACTTCTGCATTAAATTTATCATCAGAAGGACTTGTTGAGTCAGGCTCAGCAAATCCAAGGAGGCTTTCATTATCAGAAACTCGACAGATTCCTTCTGGTGATGATAACATTGATGAAGAGGGATAA 1314 0.4467 MEFDAAIPVSREHLPPDEMWQINLRSSETMESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLLPDSFFFENYQAIAAARMKGEFPERIGQPECQYYLKTGTCKFGATCRFHHPRDKAGIAGRVAMNILGYPLRPNEPECAYYLRTGQCKFGNTCKFHHPQPNNMVLSMRSSPVYPTVHSPTTPGQQSYATGITNWSSSSYIPSPRWQGPSSYAPLILPQGMVSVPGWSAYSGQMGSDSPQQTMGNGQSYGTSRQSEPANSGSQGAYSQFRSGSVPVGFYALQRENIFPERPDQPECQFYMKTGDCKFGAVCRFHHPRERMIPAPDCVLSPIGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGVFTYNISASPSADAPGRRMLGSSSGTSALNLSSEGLVESGSANPRRLSLSETRQIPSGDDNIDEEG* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g2069 437 SUPERFAMILY CCCH zinc finger 143 168 IPR036855 GO:0046872
Gso9g2069 437 ProSiteProfiles Zinc finger C3H1-type profile. 94 122 IPR000571 GO:0046872
Gso9g2069 437 Gene3D - 34 91 - -
Gso9g2069 437 Gene3D - 289 372 - -
Gso9g2069 437 SUPERFAMILY CCCH zinc finger 300 326 IPR036855 GO:0046872
Gso9g2069 437 SUPERFAMILY CCCH zinc finger 43 66 IPR036855 GO:0046872
Gso9g2069 437 SUPERFAMILY CCCH zinc finger 346 370 IPR036855 GO:0046872
Gso9g2069 437 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 40 65 IPR000571 GO:0046872
Gso9g2069 437 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 97 121 IPR000571 GO:0046872
Gso9g2069 437 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 299 324 IPR000571 GO:0046872
Gso9g2069 437 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 143 167 IPR000571 GO:0046872
Gso9g2069 437 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 345 370 IPR000571 GO:0046872
Gso9g2069 437 ProSiteProfiles Zinc finger C3H1-type profile. 39 66 IPR000571 GO:0046872
Gso9g2069 437 SMART c3hfinal6 140 167 IPR000571 GO:0046872
Gso9g2069 437 SMART c3hfinal6 94 121 IPR000571 GO:0046872
Gso9g2069 437 SMART c3hfinal6 297 324 IPR000571 GO:0046872
Gso9g2069 437 SMART c3hfinal6 38 65 IPR000571 GO:0046872
Gso9g2069 437 SMART c3hfinal6 343 370 IPR000571 GO:0046872
Gso9g2069 437 ProSiteProfiles Zinc finger C3H1-type profile. 140 168 IPR000571 GO:0046872
Gso9g2069 437 PANTHER PROTEIN PHOSPHATASE RELATED 12 436 - -
Gso9g2069 437 Gene3D - 93 178 - -
Gso9g2069 437 ProSiteProfiles Zinc finger C3H1-type profile. 343 371 IPR000571 GO:0046872
Gso9g2069 437 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33-RELATED 12 436 - -
Gso9g2069 437 ProSiteProfiles Zinc finger C3H1-type profile. 297 325 IPR000571 GO:0046872
Gso9g2069 437 SUPERFAMILY CCCH zinc finger 98 123 IPR036855 GO:0046872
Gso9g2069 437 MobiDBLite consensus disorder prediction 402 437 - -
Gso9g2069 437 MobiDBLite consensus disorder prediction 239 274 - -
Gso9g2069 437 MobiDBLite consensus disorder prediction 402 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g2069 Gso-Chr9 45034536 45042181 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g2069 19 434 C2H2 Transcription Factor Family AT3G02830 61.190 1.61e-174 491
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gso9g2069 zf-CCCH 5.3e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g2069 - - gmx:100786261 894.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1896 18 51379110 51386840 Gso9g2069 9 45034536 45042181 GST