Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g2058 ATGCCGGTTGACAACATGGGAGATAATGTTACTGTCTCGACCACTCAACACCACATTGCAATCCCCATTGAGAAATTGAATGCATCACTTGAAGCTGCAAAGGAAGAAAATTCTGTAACCGATGATGCCTATGTGGACAATGATGTCCAAAAATCTCAAGAGAAAGATGAAGAAACTGAAGAGAAGGGAGAATGTCGCTACTGTCAGGAAGAGGACTTAGTTTCTAATATGGAATCACCCTGCAATTGCAATGGTAGCGTCAAGTATGTTCACAGGAGATGCATTGATCAATGGTACAATTCCAAAGGCCGCATGATATTGTGTGAGATTTGCAGGAAGCCTTACAATCCAAATGATTACCCGCCACTTCCAGAACTTCATTCTGATAATGATGACACCGAGATAATTATATTAAGGCAAGTTATATAG 429 0.4056 MPVDNMGDNVTVSTTQHHIAIPIEKLNASLEAAKEENSVTDDAYVDNDVQKSQEKDEETEEKGECRYCQEEDLVSNMESPCNCNGSVKYVHRRCIDQWYNSKGRMILCEICRKPYNPNDYPPLPELHSDNDDTEIIILRQVI* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g2058 142 ProSiteProfiles Zinc finger RING-CH-type profile. 57 118 IPR011016 GO:0008270
Gso9g2058 142 SUPERFAMILY RING/U-box 61 116 - -
Gso9g2058 142 Coils Coil 23 43 - -
Gso9g2058 142 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 6 135 - -
Gso9g2058 142 SMART ringv_2 64 112 IPR011016 GO:0008270
Gso9g2058 142 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 48 120 IPR013083 -
Gso9g2058 142 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 6 135 IPR033275 -
Gso9g2058 142 CDD RING_CH-C4HC3_MARCH 65 112 - -
Gso9g2058 142 MobiDBLite consensus disorder prediction 33 61 - -
Gso9g2058 142 Pfam RING-variant domain 65 111 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g2058 Gso-Chr9 44962176 44965622 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g2058 54 115 C3H Transcription Factor Family AT2G22120 40.299 8.65e-08 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g2058 - - gsj:114425561 288.885