Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g2041 ATGGGGTCTATGAATTTGTTAGGTTTTTCTCTCTCTCCTCACGAAGAACACCCTTCTAGTCAAGATCACTCTCAAACGACACCTTCTCGTTTTAGCTTCAACCCTGATGGATCAATCTCAAGCACTGATGTAGCAGGAGGCTGCTTTGATCTCACTTCTGACTCAACTCCTCATTTACTTAACCTTCCTTCTTATGGCATATACGAAGCATTTCACAGAAACAATAGTATTAACACCACTCAAGATTGGAAGGAGAACTACAACAGCCAAAATTTGCTATTGGGAACTTCGTGCAATAAACAAAACATGAACCAAAACCAACAGCAACAGCCAAAGCTTGAAAACTTCCTCGGTGGACACTCATTTGGCGAACATGAGCAAACCTACGGTGGTAACTCAGCCTCTACAGATTACATGTTTCCTGCTCAGCCAGTATCGGCTGGTGGTGGTGGTAGTGGTGGTGGCAGTAACAATAACAACAACAGTAACTCCATAGGGTTATCCATGATAAAGACATGGTTGAGGAACCAACCACCGAACTCAGAAAACATCAACAACAACAATGAAAGTGGTGGCAATATTAGAAGCAGTGTGCAGCAAACTCTATCACTTTCCATGAGTACTGGTTCACAATCAAGCACATCACTGCCCCTTCTCACTGCTAGTGTGGATAATGGAGAGAGTTCTTCTGATAACAAACAACCAAACACCTCGGCTGCACTTGATTCCACCCAAACCGGAGCCATTGAAACTGCACCCAGAAAGTCAATTGACACTTTTGGACAGAGAACTTCTATCTACCGTGGTGTAACAAGGCATAGGTGGACGGGGAGGTACGAGGCTCACCTGTGGGATAATAGTTGTAGAAGAGAGGGACAGACTCGCAAAGGAAGGCAAGTTTACTTGGGTGGTTATGATAAAGAAGAAAAGGCAGCTAGAGCCTACGATTTGGCAGCACTAAAATACTGGGGAACAACCACAACAACAAATTTTCCAATTAGCCACTATGAGAAAGAGTTGGAAGAAATGAAGCACATGACTAGGCAAGAGTACGTTGCGTCATTGAGAAGGAAGAGTAGTGGGTTTTCTCGCGGTGCATCCATTTATCGAGGAGTGACGAGACACCACCAACATGGAAGGTGGCAAGCGAGGATTGGAAGAGTTGCTGGCAACAAGGATCTTTACTTGGGAACTTTTAGCACCCAAGAAGAGGCAGCGGAAGCATATGATGTAGCAGCAATCAAATTCCGAGGACTAAGTGCTGTTACAAACTTTGACATGAGCAGATATGACGTGAAAAGCATACTTGAGAGCACCACTTTGCCAATAGGTGGTGCTGCAAAGCGTTTGAAGGATATGGAGCAGGTTGAACTGAGTGTGGATAATGGTCATAGAGCAGATCAAGTAGATCATAGTATCATCATGAGTTCTCACCTAACTCAAGGAATCAATAACAACTATGCAGGAGGGGGAACAGCAACTCATCATAACTGGCACAATGCTCATGCATTCCACCAACCTCAACCTTGCACCACCATGCACTACCCTTATGGACAAAGAATTAATTGGTGCAAGCAAGAACAACAAGACAACTCTGATGCCCCTCACTCTTTGTCTTATTCAGATATTCATCAACTTCAGCTAGGGAACAATGGAACACATAACTTCTTTCACACAAATTCAGGGTTGCACCCTATGTTGAGCATGGATTCTGCTTCCATTGACAATAGCTCTTCTTCTAACTCGGTTGTTTATGATGGTTATGGAGGTGGTGGGGGCTACAATGTGATGCCTATGGGAACTACTACTGCTGTTGTTGCAAGTGATGGTGATCAAAATCCAAGAAGCAATCATGGTTTTGGTGATAATGAGATAAAAGCACTTGGTTATGAAAGTGTGTATGGCTCTGCAACTGATTCTTATCATGCACATGCAAGGAACTTGTATTATCTTACTCAACAGCAATCATCTTCTGTTGATACAGTGAAGGCTAGTGCATATGATCAAGGGTCTGCATGCAATACTTGGGTTCCAACTGCTATTCCAACTCATGCACCCAGATCAACTACTAGTATGGCTCTCTGCCATGGGGCTACTACACCCTTCTCTTTATTGCATGAATAG 2124 0.4364 MGSMNLLGFSLSPHEEHPSSQDHSQTTPSRFSFNPDGSISSTDVAGGCFDLTSDSTPHLLNLPSYGIYEAFHRNNSINTTQDWKENYNSQNLLLGTSCNKQNMNQNQQQQPKLENFLGGHSFGEHEQTYGGNSASTDYMFPAQPVSAGGGGSGGGSNNNNNSNSIGLSMIKTWLRNQPPNSENINNNNESGGNIRSSVQQTLSLSMSTGSQSSTSLPLLTASVDNGESSSDNKQPNTSAALDSTQTGAIETAPRKSIDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGTTTTTNFPISHYEKELEEMKHMTRQEYVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGLSAVTNFDMSRYDVKSILESTTLPIGGAAKRLKDMEQVELSVDNGHRADQVDHSIIMSSHLTQGINNNYAGGGTATHHNWHNAHAFHQPQPCTTMHYPYGQRINWCKQEQQDNSDAPHSLSYSDIHQLQLGNNGTHNFFHTNSGLHPMLSMDSASIDNSSSSNSVVYDGYGGGGGYNVMPMGTTTAVVASDGDQNPRSNHGFGDNEIKALGYESVYGSATDSYHAHARNLYYLTQQQSSSVDTVKASAYDQGSACNTWVPTAIPTHAPRSTTSMALCHGATTPFSLLHE* 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g2041 707 MobiDBLite consensus disorder prediction 22 37 - -
Gso9g2041 707 Gene3D AP2/ERF domain 368 428 IPR036955 GO:0003700|GO:0006355
Gso9g2041 707 Gene3D AP2/ERF domain 266 334 IPR036955 GO:0003700|GO:0006355
Gso9g2041 707 SUPERFAMILY DNA-binding domain 265 334 IPR016177 GO:0003677
Gso9g2041 707 MobiDBLite consensus disorder prediction 1 37 - -
Gso9g2041 707 CDD AP2 265 334 IPR001471 GO:0003700|GO:0006355
Gso9g2041 707 SUPERFAMILY DNA-binding domain 367 428 IPR016177 GO:0003677
Gso9g2041 707 PRINTS Ethylene responsive element binding protein signature 267 278 IPR001471 GO:0003700|GO:0006355
Gso9g2041 707 PRINTS Ethylene responsive element binding protein signature 408 428 IPR001471 GO:0003700|GO:0006355
Gso9g2041 707 PANTHER BNAC02G44180D PROTEIN 5 622 - -
Gso9g2041 707 Pfam AP2 domain 266 324 IPR001471 GO:0003700|GO:0006355
Gso9g2041 707 Pfam AP2 domain 368 418 IPR001471 GO:0003700|GO:0006355
Gso9g2041 707 SMART rav1_2 266 338 IPR001471 GO:0003700|GO:0006355
Gso9g2041 707 SMART rav1_2 368 432 IPR001471 GO:0003700|GO:0006355
Gso9g2041 707 MobiDBLite consensus disorder prediction 175 194 - -
Gso9g2041 707 MobiDBLite consensus disorder prediction 201 255 - -
Gso9g2041 707 MobiDBLite consensus disorder prediction 126 140 - -
Gso9g2041 707 CDD AP2 367 428 IPR001471 GO:0003700|GO:0006355
Gso9g2041 707 MobiDBLite consensus disorder prediction 115 164 - -
Gso9g2041 707 MobiDBLite consensus disorder prediction 150 164 - -
Gso9g2041 707 ProSiteProfiles AP2/ERF domain profile. 266 332 IPR001471 GO:0003700|GO:0006355
Gso9g2041 707 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 5 622 - -
Gso9g2041 707 ProSiteProfiles AP2/ERF domain profile. 368 426 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g2041 Gso-Chr9 44820670 44825325 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g2041 164 603 AP2-EREBP Transcription Factor Family AT5G17430 54.464 1.37e-137 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Gso9g2041 AP2 1.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g2041 K09285 - gmx:100526744 1300.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1864 18 51134389 51139175 Gso9g2041 9 44820670 44825325 GST