Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g2030 ATGGAGGATTCATTGGAGAATTGGATTTCACAGTTGGAAATGGAGGAATATGATGATGTGTTGAATGAAAGTCATCATGGCTCATTTGATGAGCAAGAGTTCCTAAGAGAGATCCTTGAGGAGCAGCCAGAAAACTTGTCACCTCAAAGAGAAAACATCTGCAGCACCAGCCCCACCAACAGCACTGTGTCCTTTGATGAGGCAATTAGCTTTAATTATGCGAGTGGCAGCACTCTCCACAAAAGCAACAGCTCCAACTCCATCAAGTCTTTGAAAAGATCATCATCATCAAGTGTCTCACCAGCCTCCACCACCACCACCACCACCACCACATACCTTCTCTCTTTTGATACCTCAATTGTTGAACCAATCACACTTAAACCTTCCCCTAAGCTTGATGTGGTGAAAGATGGGTCTGAGTTTGATGCATTGATGCCCCAAACCCAACCAAAGAAGAAGGTTAGAAGGTCATGTGAGACACGGCATCACATAATTGCTGAGAGGAAAAGGAGGCAGGAACTGACAGGGAGCATTATAGCACTTTCAGCAACTATTCCTGGGCTCAAGAAGATGGACAAGGCTTATGTGCTTCGTGAAGCTGTCAATTACACAAAACAACTTCAAGAGCGAGTTAAAGAGTTGGAAAATCAAAACAAAGTAGATTCAGCAACATTCATAAGGAAATCTGAAGCCTCCTCAGATAAAAACACCGGCAATTGTGAAACGAACAAAGAAATATCACTATTTGAGGTTGAAGCAAGAGTCCTAGATAAGGAAGTACTCATTGGAATCCATTGTGAGAAGCAAAAGGACATAGTGTTCAAAATACATGCCTTGCTTAGAAACCTCCATCTATCTACAACCAGTAGCACCGTATTGCCATTTGGGACTTCTACTCTTATAATCAACATTATTGCTCAGATGAATGGCGAATACAGCATGACCAAGGATGACCTAGTGAAAAAACTTAGAGAATATCTGTTGGAGGTGTATGACATGCAATAG 1005 0.4199 MEDSLENWISQLEMEEYDDVLNESHHGSFDEQEFLREILEEQPENLSPQRENICSTSPTNSTVSFDEAISFNYASGSTLHKSNSSNSIKSLKRSSSSSVSPASTTTTTTTTYLLSFDTSIVEPITLKPSPKLDVVKDGSEFDALMPQTQPKKKVRRSCETRHHIIAERKRRQELTGSIIALSATIPGLKKMDKAYVLREAVNYTKQLQERVKELENQNKVDSATFIRKSEASSDKNTGNCETNKEISLFEVEARVLDKEVLIGIHCEKQKDIVFKIHALLRNLHLSTTSSTVLPFGTSTLIINIIAQMNGEYSMTKDDLVKKLREYLLEVYDMQ* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g2030 334 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 4 333 - -
Gso9g2030 334 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 161 220 IPR036638 GO:0046983
Gso9g2030 334 PANTHER BHLH TRANSCRIPTION FACTOR 4 333 - -
Gso9g2030 334 Coils Coil 197 224 - -
Gso9g2030 334 Gene3D - 147 221 IPR036638 GO:0046983
Gso9g2030 334 MobiDBLite consensus disorder prediction 79 105 - -
Gso9g2030 334 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 158 207 IPR011598 GO:0046983
Gso9g2030 334 SMART finulus 164 213 IPR011598 GO:0046983
Gso9g2030 334 Pfam Helix-loop-helix DNA-binding domain 161 208 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g2030 Gso-Chr9 44717415 44720296 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g2030 155 327 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 46.961 5.54e-39 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso9g2030 HLH 1.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g2030 - - gmx:100818334 592.038
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1851 18 51009237 51013630 Gso9g2030 9 44717415 44720296 GST